| Message ID | 20240311110750.16327-20-romain.garbage@inria.fr |
|---|---|
| State | New |
| Headers | show
Return-Path: <guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org> X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 4288D27BBEA; Mon, 11 Mar 2024 11:10:22 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 15F9B27BBE2 for <patchwork@mira.cbaines.net>; Mon, 11 Mar 2024 11:10:21 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from <guix-patches-bounces@gnu.org>) id 1rjdXj-00067W-W4; Mon, 11 Mar 2024 07:10:13 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <Debian-debbugs@debbugs.gnu.org>) id 1rjdXE-0005w1-KP for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:36 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from <Debian-debbugs@debbugs.gnu.org>) id 1rjdXE-0001V2-BX for guix-patches@gnu.org; Mon, 11 Mar 2024 07:09:36 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from <Debian-debbugs@debbugs.gnu.org>) id 1rjdXm-0002ij-48 for guix-patches@gnu.org; Mon, 11 Mar 2024 07:10:10 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69729] [PATCH 19/41] gnu: plink-ng: Remove lapack dep. 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| Series |
Improve performance in lapack dependent packages.
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expand
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diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8b2fe2d017..6c2dc95fa6 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9650,7 +9650,7 @@ (define-public plink-ng (list #:tests? #false ;TEST_EXTRACT_CHR doesn't produce expected files #:make-flags - #~(list "BLASFLAGS=-llapack -lopenblas" + #~(list "BLASFLAGS=-lopenblas" "NO_SSE42=1" "NO_AVX2=1" "STATIC_ZSTD=" @@ -9677,7 +9677,7 @@ (define-public plink-ng (string-append (assoc-ref outputs "out") "/bin"))))))) (inputs - (list lapack openblas zlib `(,zstd "lib"))) + (list openblas zlib `(,zstd "lib"))) (native-inputs (list diffutils plink python simde)) ; for tests (home-page "https://www.cog-genomics.org/plink/")