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[bug#62428,07/14] gnu: Add r-mdqc.

Message ID 20230324231900.28367-7-madalinionel.patrascu@mdc-berlin.de
State New
Headers show
Series [bug#62428,01/14] gnu: Add r-anota2seq. | expand

Commit Message

Mădălin Ionel Patrașcu March 24, 2023, 11:18 p.m. UTC
* gnu/packages/bioconductor.scm (r-mdqc): New variable.
---
 gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)
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Patch

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 71d65d64a5..39367dd927 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6968,6 +6968,31 @@  (define-public r-maser
 and visualizaton of alternative splicing events generated by rMATS.")
     (license license:expat)))
 
+(define-public r-mdqc
+  (package
+    (name "r-mdqc")
+    (version "1.60.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "mdqc" version))
+       (sha256
+        (base32 "1hn6m0z8q3jnzb0h8m29khgm0cx81cfs3s1j6hlg4wsrwkha1i3w"))))
+    (properties `((upstream-name . "mdqc")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-cluster
+           r-mass))
+    (home-page "https://bioconductor.org/packages/mdqc")
+    (synopsis "Mahalanobis distance quality control for microarrays")
+    (description
+     "MDQC is a multivariate quality assessment method for microarrays based on
+quality control (QC) reports.  The Mahalanobis distance of an array's quality
+attributes is used to measure the similarity of the quality of that array
+against the quality of the other arrays.  Then, arrays with unusually high
+distances can be flagged as potentially low-quality.")
+    (license license:lgpl2.0+)))
+
 (define-public r-metagenomeseq
   (package
     (name "r-metagenomeseq")