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[bug#62428,06/14] gnu: Add r-apcomplex.

Message ID 20230324231900.28367-6-madalinionel.patrascu@mdc-berlin.de
State New
Headers show
Series [bug#62428,01/14] gnu: Add r-anota2seq. | expand

Commit Message

Mădălin Ionel Patrașcu March 24, 2023, 11:18 p.m. UTC 
* gnu/packages/bioconductor.scm (r-apcomplex): New variable.
---
 gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)
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Patch

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 21aa3476c0..71d65d64a5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9420,6 +9420,31 @@  (define-public r-apalyzer
 expression analysis using RNA-seq data.")
     (license license:lgpl3)))
 
+(define-public r-apcomplex
+  (package
+    (name "r-apcomplex")
+    (version "2.64.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "apComplex" version))
+       (sha256
+        (base32 "0ycchrdhx7zh62f0p0gxm7g58m2w3c2lfkaasrwydspd3jx0rsna"))))
+    (properties `((upstream-name . "apComplex")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-graph
+           r-org-sc-sgd-db
+           r-rbgl
+           r-rgraphviz))
+    (home-page "https://bioconductor.org/packages/apComplex")
+    (synopsis "Estimate protein complex membership using AP-MS protein data")
+    (description
+     "This package provides functions to estimate a bipartite graph of protein
+complex membership using @acronym{AP-MS, affinity purification–mass spectrometry}
+data.")
+    (license license:lgpl2.0+)))
+
 (define-public r-apeglm
   (package
    (name "r-apeglm")