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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 24 Mar 2023 23:20:05 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 62428 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: To: <62428@debbugs.gnu.org> Received: via spool by 62428-submit@debbugs.gnu.org id=B62428.167969997822191 (code B ref 62428); Fri, 24 Mar 2023 23:20:05 +0000 Received: (at 62428) by debbugs.gnu.org; 24 Mar 2023 23:19:38 +0000 Received: from localhost ([127.0.0.1]:41666 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pfqh8-0005lk-7D for submit@debbugs.gnu.org; Fri, 24 Mar 2023 19:19:38 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:44857) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pfqgw-0005jl-TM for 62428@debbugs.gnu.org; Fri, 24 Mar 2023 19:19:27 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1679699956; x=1681514357; bh=VSG4+KkSq6jiD0FEsbOvnZPaqRBFudG4XyhRcYjkyvk=; b=Ni8S4KitIbQ8 YpvqCyc5/vWrPacyiZ9U/umuxBDmgKiaiAGTtAvXVpKIQMZjmIRAqdoqkq39d5zu jKMo8klahKNC2qBlAZIyzjvdXSTufXlQmjIY9WkSvOxNW4Nwk/40r9wBOcrPiV7M Tllev5tORkixE+WVjlxzYYP71PNwHM4= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id D795430019D for <62428@debbugs.gnu.org>; Sat, 25 Mar 2023 00:19:16 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.23; Sat, 25 Mar 2023 00:19:12 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Sat, 25 Mar 2023 00:18:53 +0100 Message-ID: <20230324231900.28367-7-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 In-Reply-To: <20230324231900.28367-1-madalinionel.patrascu@mdc-berlin.de> References: <20230324231900.28367-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27524.003 X-TM-AS-Result: No-10--0.722000-5.000000 X-TMASE-MatchedRID: 54gb2yeIOXT/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6rIGj0lq6L0YXjfR3d0weRny/Hx1AgJrrI1v /+HUjidRh0YasV59YfxJTjjs9yT6Yo8WMkQWv6iV3LAytsQR4e42j49Ftap9Eymsk/wUE4hqOvG 6VW4FmOZpK2j+/zzAuH6HKqegP5nmZpHaT7Nk8h6AJfBeyyoLclTs224IdfsnBbgAOnvaIzWEKn YY64E5ZgyQTsnD1LuIAEIjVIwfDvLTnVnv1JP77sGTvZJmllrz/PhPL0kApH8kjm+elEcbI X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--0.722000-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27524.003 X-TM-SNTS-SMTP: 9857609EAF0F6C011D707F19DD17F7CDD8795143DCC4564B051C7557ED3D1A192002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-mdqc): New variable. --- gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 71d65d64a5..39367dd927 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6968,6 +6968,31 @@ (define-public r-maser and visualizaton of alternative splicing events generated by rMATS.") (license license:expat))) +(define-public r-mdqc + (package + (name "r-mdqc") + (version "1.60.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "mdqc" version)) + (sha256 + (base32 "1hn6m0z8q3jnzb0h8m29khgm0cx81cfs3s1j6hlg4wsrwkha1i3w")))) + (properties `((upstream-name . "mdqc"))) + (build-system r-build-system) + (propagated-inputs + (list r-cluster + r-mass)) + (home-page "https://bioconductor.org/packages/mdqc") + (synopsis "Mahalanobis distance quality control for microarrays") + (description + "MDQC is a multivariate quality assessment method for microarrays based on +quality control (QC) reports. The Mahalanobis distance of an array's quality +attributes is used to measure the similarity of the quality of that array +against the quality of the other arrays. Then, arrays with unusually high +distances can be flagged as potentially low-quality.") + (license license:lgpl2.0+))) + (define-public r-metagenomeseq (package (name "r-metagenomeseq")