diff mbox series

[bug#64250,15/15] gnu: Add r-scriabin.

Message ID f5b907ea49fd87aa10eccd118d6ace53febc2e86.1687527675.git.navid.afkhami@mdc-berlin.de
State New
Headers show
Series *** R package (scriabin) *** | expand

Commit Message

nafkhamdc June 23, 2023, 1:48 p.m. UTC 
* gnu/packages/bioinformatics.scm (r-scriabin): New variable.
---
 gnu/packages/bioinformatics.scm | 54 +++++++++++++++++++++++++++++++++
 1 file changed, 54 insertions(+)
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Patch

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9de0470f7e..ca24263c79 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9866,6 +9866,60 @@  (define-public r-sccustomize
 visualization and analysis of single-cell data using R.")
       (license license:gpl3+))))
 
+(define-public r-scriabin
+  (let ((commit "313d15e9150413e6bcad0947215da3a09c0257f5")
+        (revision "1"))
+    (package
+      (name "r-scriabin")
+      (version (git-version "0.0.0.9000" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/BlishLab/scriabin")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "0k8khwcr3a281pa33h6l3wdk5igyqc4xknydiazk7qyf5w25g9zg"))))
+      (properties `((upstream-name . "scriabin")))
+      (build-system r-build-system)
+      (propagated-inputs (list r-ade4
+                               r-cellid
+                               r-circlize
+                               r-clipr
+                               r-complexheatmap
+                               r-complexheatmap
+                               r-cowplot
+                               r-dplyr
+                               r-factoextra
+                               r-fsa
+                               r-genefilter
+                               r-ggalluvial
+                               r-ggfittext
+                               r-ggplot2
+                               r-ggsci
+                               r-limma
+                               r-magrittr
+                               r-matrix
+                               r-matrixstats
+                               r-networkd3
+                               r-nichenetr
+                               r-pbapply
+                               r-qlcmatrix
+                               r-scales
+                               r-scater
+                               r-seurat
+                               r-tibble
+                               r-tidyft
+                               r-wgcna))
+      (native-inputs (list r-knitr))
+	        (home-page "https://github.com/BlishLab/scriabin")
+      (synopsis "Single-cell resolved interaction analysis through binning")
+      (description
+       "Scriabin aims to provide a comprehensive view of cell-cell communication (CCC).
+It achieves this without requiring subsampling or aggregation.")
+      (license license:expat))))
+
 (define-public r-markdownhelpers
   (let ((commit "793372d28ebed607cc1d35f909a1caedb2b41ffe")
         (revision "1"))