@@ -1436,6 +1436,50 @@ (define-public r-celldex
single-cell data or deconvolution of bulk RNA-seq.")
(license license:gpl3)))
+(define-public r-cellid
+ (package
+ (name "r-cellid")
+ (version "1.8.1")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "CelliD" version))
+ (sha256
+ (base32
+ "0vigvqjrlqbi5kviaj8qvyq3v8afgbc5pjrz7zmx2ckf4hdp0g03"))))
+ (properties `((upstream-name . "CelliD")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-data-table
+ r-biocparallel
+ r-fastmatch
+ r-fgsea
+ r-ggplot2
+ r-glue
+ r-irlba
+ r-matrix
+ r-matrixstats
+ r-pbapply
+ r-rcpp
+ r-rcpparmadillo
+ r-reticulate
+ r-rtsne
+ r-seurat
+ r-stringr
+ r-tictoc
+ r-singlecellexperiment
+ r-summarizedexperiment
+ r-umap))
+ (native-inputs (list r-knitr r-scater))
+ (home-page "https://bioconductor.org/packages/CelliD")
+ (synopsis
+ "Single cell gene signature extraction using multiple correspondence analysis")
+ (description
+ "CelliD is a clustering-free method for extracting per-cell gene signatures from scRNA-seq.
+CelliD allows unbiased cell identity recognition across different donors,
+tissues-of-origin, model organisms and single-cell omics protocols. The
+package can also be used to explore functional pathways enrichment in
+single cell data.")
+ (license license:gpl3)))
+
(define-public r-champdata
(package
(name "r-champdata")