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Resent-From: Navid Afkhami Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 23 Jun 2023 13:50:08 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 64250 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <64250@debbugs.gnu.org> Cc: Navid Afkhami Received: via spool by 64250-submit@debbugs.gnu.org id=B64250.168752819027923 (code B ref 64250); Fri, 23 Jun 2023 13:50:08 +0000 Received: (at 64250) by debbugs.gnu.org; 23 Jun 2023 13:49:50 +0000 Received: from localhost ([127.0.0.1]:37951 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qChAb-0007GE-Ri for submit@debbugs.gnu.org; Fri, 23 Jun 2023 09:49:50 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:35577) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qChAL-0007E6-Tm for 64250@debbugs.gnu.org; Fri, 23 Jun 2023 09:49:34 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1687528168; x=1689342569; bh=tmhgofMu4w7yryO5FK0ZJxyhm00TqJ/L/VlVXJXeKSs=; b=EASkCY/ffg8V H08RI6stzA/nVZx9/DoacUW4iCFBMClUcjFDCSr0HurMcKFqFGtQuneZAHVoZJhW 5eYHz0SZXFO3izJWbUz8zj2c4FsY8+hDLlGtjP7SqNrIJJ+RvFzY2ywJtIbdxRnw 8kS0FpCvTKv2ptT2hgtAKmHepUdlijo= Received-SPF: Pass (mailfrom) identity=mailfrom; client-ip=141.80.113.62; helo=sw-it-p-ex4.mdc-berlin.net; envelope-from=navid.afkhami@mdc-berlin.de; receiver= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 0C853A01EE for <64250@debbugs.gnu.org>; Fri, 23 Jun 2023 15:49:28 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.27; Fri, 23 Jun 2023 15:49:27 +0200 From: Navid Afkhami Date: Fri, 23 Jun 2023 13:48:59 +0000 Message-ID: X-Mailer: git-send-email 2.34.1 In-Reply-To: References: MIME-Version: 1.0 X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27708.007 X-TM-AS-Result: No-10--6.759400-5.000000 X-TMASE-MatchedRID: 2wfub8HDRfN6fjezFKxXHArcxrzwsv5uwTlc9CcHMZerwqxtE531VICu qghmtWfXXt3JNptef3p4Zvg4N7yewiq+GZ9ZHxIhuW77/y896sj4qCLIu0mtIMIubEPSkNnJj46 v2aqkNBmp4L5MAnrh2PV58hdT3FI3bALuZMRear0EClJgjzpjqJ1Eh/SbOOeGU72YOAMDJjieAi CmPx4NwBnUJ0Ek6yhjxEHRux+uk8hfNjF5BHUO+/VqC+U9hSeSgPHwcgcWutVvHX1XAKL+cK/lm jDcIZIN6eOhReWN/oI= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.759400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27708.007 X-TM-SNTS-SMTP: 486E43B6087BD55872D60C934680A0B18A5D08071C830ABB6C381392F4A516962002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-scriabin): New variable. --- gnu/packages/bioinformatics.scm | 54 +++++++++++++++++++++++++++++++++ 1 file changed, 54 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9de0470f7e..ca24263c79 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9866,6 +9866,60 @@ (define-public r-sccustomize visualization and analysis of single-cell data using R.") (license license:gpl3+)))) +(define-public r-scriabin + (let ((commit "313d15e9150413e6bcad0947215da3a09c0257f5") + (revision "1")) + (package + (name "r-scriabin") + (version (git-version "0.0.0.9000" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/BlishLab/scriabin") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0k8khwcr3a281pa33h6l3wdk5igyqc4xknydiazk7qyf5w25g9zg")))) + (properties `((upstream-name . "scriabin"))) + (build-system r-build-system) + (propagated-inputs (list r-ade4 + r-cellid + r-circlize + r-clipr + r-complexheatmap + r-complexheatmap + r-cowplot + r-dplyr + r-factoextra + r-fsa + r-genefilter + r-ggalluvial + r-ggfittext + r-ggplot2 + r-ggsci + r-limma + r-magrittr + r-matrix + r-matrixstats + r-networkd3 + r-nichenetr + r-pbapply + r-qlcmatrix + r-scales + r-scater + r-seurat + r-tibble + r-tidyft + r-wgcna)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/BlishLab/scriabin") + (synopsis "Single-cell resolved interaction analysis through binning") + (description + "Scriabin aims to provide a comprehensive view of cell-cell communication (CCC). +It achieves this without requiring subsampling or aggregation.") + (license license:expat)))) + (define-public r-markdownhelpers (let ((commit "793372d28ebed607cc1d35f909a1caedb2b41ffe") (revision "1"))