diff mbox series

[bug#61220,04/10] gnu: Add r-italics.

Message ID 20230202022657.67003-4-madalinionel.patrascu@mdc-berlin.de
State New
Headers show
Series [bug#61220,01/10] gnu: Add r-glad. | expand

Commit Message

Mădălin Ionel Patrașcu Feb. 2, 2023, 2:26 a.m. UTC 
* gnu/packages/bioconductor.scm (r-italics): New variable.
---
 gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)
diff mbox series

Patch

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index fa8e60a4f4..1efafb1cd3 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4510,6 +4510,33 @@  (define-public r-isoformswitchanalyzer
 Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.")
     (license license:gpl2+)))
 
+(define-public r-italics
+  (package
+    (name "r-italics")
+    (version "2.58.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "ITALICS" version))
+       (sha256
+        (base32 "0g937h9zxkxnm424wh58b46mfasdd7pqy5c04r0a46mx9lxibgbs"))))
+    (properties `((upstream-name . "ITALICS")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-affxparser
+           r-dbi
+           r-glad
+           r-italicsdata
+           r-oligo
+           r-oligoclasses
+           r-pd-mapping50k-xba240))
+    (home-page "http://bioinfo.curie.fr") ;;no https
+    (synopsis "Normalizing of the Affymetrix GeneChip human mapping")
+    (description
+     "This package provides a method to normalize the Affymetrix GeneChip human
+mapping 100K and 500K set.")
+    (license license:gpl2)))
+
 ;; This is a CRAN package, but it depends on r-biobase and r-limma from Bioconductor.
 (define-public r-absfiltergsea
   (package