@@ -31,6 +31,7 @@
(define-module (gnu packages bioconductor)
#:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix gexp)
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix git-download)
@@ -1800,6 +1801,49 @@ (define-public r-absseq
ranking by fold-change and visualization.")
(license license:gpl3+)))
+(define-public r-adacgh2
+ (package
+ (name "r-adacgh2")
+ (version "2.38.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ADaCGH2" version))
+ (sha256
+ (base32 "0g9x3lnr56035wq9ijdcri4sz5pwj8184yxm415gmsxrii9xvpfd"))))
+ (properties `((upstream-name . "ADaCGH2")))
+ (build-system r-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'configure 'set-PYTHONPATH
+ (lambda _
+ (setenv "PYTHONPATH"
+ (string-append (getcwd) ":"
+ (getenv "GUIX_PYTHONPATH"))))))))
+ ;; This is needed by toMap.py script which is not compatible with python3
+ (inputs (list python2-minimal))
+ (propagated-inputs
+ (list r-acgh
+ r-bit
+ r-cluster
+ r-dnacopy
+ r-ff
+ r-glad
+ r-snapcgh
+ r-tilingarray
+ r-waveslim))
+ (home-page "https://github.com/rdiaz02/adacgh2")
+ (synopsis "Big data analysis from aCGH experiments")
+ (description
+ "This package analysis and creates plotts of array @acronym{CGH, comparative
+genomic hybridization} data. Also, it allows usage of @acronym{CBS, Circular
+Binary Segementation}, wavelet-based smoothing, HMM, BioHMM, GLAD, CGHseg. Most
+computations are parallelized (either via forking or with clusters, including MPI
+and sockets clusters) and use ff for storing data.")
+ (license license:gpl3+)))
+
(define-public r-adam
(package
(name "r-adam")