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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Thu, 02 Feb 2023 02:28:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61220 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <61220@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 61220-submit@debbugs.gnu.org id=B61220.16753048439117 (code B ref 61220); Thu, 02 Feb 2023 02:28:02 +0000 Received: (at 61220) by debbugs.gnu.org; 2 Feb 2023 02:27:23 +0000 Received: from localhost ([127.0.0.1]:60205 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pNPJr-0002Mw-2R for submit@debbugs.gnu.org; Wed, 01 Feb 2023 21:27:23 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:38693) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pNPJo-0002M4-3r for 61220@debbugs.gnu.org; Wed, 01 Feb 2023 21:27:20 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1675304833; x=1677119234; bh=vfB1RlGR/vgNYLpWGZay85VqifVWQJMh/rENTBdcVuw=; b=IGJXpznKxvTG c6dzeCc2swux8vA2geUk7owd0gSv0KAB+HrfD5DHyI21qZAkzNHjvjGQeFrML4tr iCZSAFc+sca3itT4snakKgzI/DjyTUI4cfVA3nnCSDJcSgQO6mCprFor6+2Xogvn mj6Cr/jU7yLoBxrHmv5RUk3tAt9VjbY= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id DB43C16061C for <61220@debbugs.gnu.org>; Thu, 2 Feb 2023 03:27:13 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.17; Thu, 2 Feb 2023 03:27:11 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Thu, 2 Feb 2023 03:26:51 +0100 Message-ID: <20230202022657.67003-4-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 In-Reply-To: <20230202022657.67003-1-madalinionel.patrascu@mdc-berlin.de> References: <20230202022657.67003-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27422.004 X-TM-AS-Result: No-10--2.054200-5.000000 X-TMASE-MatchedRID: 4r2MyAYFTnf/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYmDqLi3Kkph1lhGAWvOYxWo71Wx2uUbPLcXjfR3d0weRiVIhha/jkqKmA0 yITMNzjl9LQinZ4QefCP/VFuTOXUTEKa2f+1p7r3kwjHXXC/4I8prJP8FBOIaVMlrg6kQ8Tkgzp DCDJ1v2fvqJGELkFciRR2ee8FkHDh4T2hU88Wi01qDzxTxIZdLZzyWHChdtX5Gyfe8vmPIaYa8M G3sx72Qkot9h0SBLJu051Z79ST++7Bk72SZpZa8/z4Ty9JAKR/JI5vnpRHGyA== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.054200-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27422.004 X-TM-SNTS-SMTP: 6C296052703012B9FE656F247C310456D0399E4276893A99D6E4A78C2B57E6B42002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-italics): New variable. --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index fa8e60a4f4..1efafb1cd3 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4510,6 +4510,33 @@ (define-public r-isoformswitchanalyzer Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.") (license license:gpl2+))) +(define-public r-italics + (package + (name "r-italics") + (version "2.58.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "ITALICS" version)) + (sha256 + (base32 "0g937h9zxkxnm424wh58b46mfasdd7pqy5c04r0a46mx9lxibgbs")))) + (properties `((upstream-name . "ITALICS"))) + (build-system r-build-system) + (propagated-inputs + (list r-affxparser + r-dbi + r-glad + r-italicsdata + r-oligo + r-oligoclasses + r-pd-mapping50k-xba240)) + (home-page "http://bioinfo.curie.fr") ;;no https + (synopsis "Normalizing of the Affymetrix GeneChip human mapping") + (description + "This package provides a method to normalize the Affymetrix GeneChip human +mapping 100K and 500K set.") + (license license:gpl2))) + ;; This is a CRAN package, but it depends on r-biobase and r-limma from Bioconductor. (define-public r-absfiltergsea (package