| Message ID | 20190724182204.6818-9-zimon.toutoune@gmail.com |
|---|---|
| State | Accepted |
| Headers | show |
| Series | Add r packages to process flow cytometry data | expand |
zimoun <zimon.toutoune@gmail.com> writes: > * gnu/packages/bioconductor.scm (r-flowpeaks): New variable. […] > + (license license:artistic2.0))) ;TODO: artistic1.0 does not exist Unfortunately, version 1.0 of the Artistic License is too unclear to be considered a free license. I have excluded this package from the set of patches that I’ll apply to the master branch.
Dear, All the patches are merged now; except r-flowpeaks. Because this package use Artistic1.0 which is not enough clear to be considered "free" [1,2] (GNU's point of view [3]) and upstream are not responsive, let clean the bug tracker. :-) [1] https://debbugs.gnu.org/cgi/bugreport.cgi?bug=36797#16 [2] https://lists.gnu.org/archive/html/guix-devel/2019-12/msg00286.html [3] https://www.gnu.org/licenses/license-list.en.html#ArtisticLicense All the best, simon
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0f023665c2..ab4d9f4075 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4907,3 +4907,26 @@ and to both short and long sequence reads.") (description "Identifies cell populations in Flow Cytometry data using non-parametric clustering and segmented-regression-based change point detection. Note: R 2.11.0 or newer is required.") (license license:artistic2.0))) + +(define-public r-flowpeaks + (package + (name "r-flowpeaks") + (version "1.30.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "flowPeaks" version)) + (sha256 + (base32 + "1ncz7n6n39svi444yy29ip53398392s3m6z0h2a77rhcnzg456wy")))) + (properties `((upstream-name . "flowPeaks"))) + (build-system r-build-system) + (inputs `(("gsl" ,gsl))) + (home-page + "https://bioconductor.org/packages/flowPeaks") + (synopsis + "An R package for flow data clustering") + (description + "This package provides a fast and automatic clustering to classify the cells into subpopulations based on finding the peaks from the overall density function generated by K-means.") + (license license:artistic2.0))) ;TODO: artistic1.0 does not exist +