@@ -22277,6 +22277,37 @@ (define-public r-dir-expiry
eliminating obsolete caches generated by old versions of packages.")
(license license:gpl3)))
+(define-public r-basic4cseq
+ (package
+ (name "r-basic4cseq")
+ (version "1.38.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "Basic4Cseq" version))
+ (sha256
+ (base32 "1vlrrkg885w77w34m2q8hngr95hhh5bkw9hrzyhnp39igjkcwqx4"))))
+ (properties `((upstream-name . "Basic4Cseq")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biostrings
+ r-bsgenome-ecoli-ncbi-20080805
+ r-catools
+ r-genomicalignments
+ r-genomicranges
+ r-rcircos))
+ (home-page "https://bioconductor.org/packages/Basic4Cseq")
+ (synopsis "Analyzing 4C-seq data")
+ (description
+ "Basic4Cseq is an R/Bioconductor package for basic filtering, analysis and
+subsequent visualization of @acronym{4C-seq, circular chromosome conformation
+capture sequencing} data. Virtual fragment libraries can be created for any
+BSGenome package, and filter functions for both reads and fragments and basic
+quality controls are included. Fragment data in the vicinity of the experiment's
+viewpoint can be visualized as a coverage plot based on a running median approach
+and a multi-scale contact profile.")
+ (license license:lgpl3)))
+
(define-public r-basilisk-utils
(package
(name "r-basilisk-utils")