mbox series

[bug#66690,0/7] Upgrade cwltool

Message ID cover.1698013055.git.arunisaac@systemreboot.net
Headers show
Series Upgrade cwltool | expand

Message

Arun Isaac Oct. 22, 2023, 10:27 p.m. UTC 
This patchset upgrades cwltool to the latest version.

Arun Isaac (7):
  gnu: python-ruamel.yaml.clib: Update to 0.2.7.
  gnu: python-ruamel.yaml: Update to 0.17.40.
  gnu: python-schema-salad: Update to 8.4.20230927144413.
  gnu: Add python-cwlformat.
  gnu: Add python-cwl-upgrader.
  gnu: Add python-cwl-utils.
  gnu: cwltool: Update to 3.1.20230601100705.

 gnu/packages/bioinformatics.scm | 232 ++++++++++++++++++++++++--------
 gnu/packages/serialization.scm  |   9 +-
 2 files changed, 178 insertions(+), 63 deletions(-)


base-commit: fb3707762de577074c73d40575fe759095ef83e6

Comments

Ludovic Courtès Nov. 22, 2023, 2:37 p.m. UTC | #1 
Hi,

Arun Isaac <arunisaac@systemreboot.net> skribis:

> This patchset upgrades cwltool to the latest version.
>
> Arun Isaac (7):
>   gnu: python-ruamel.yaml.clib: Update to 0.2.7.
>   gnu: python-ruamel.yaml: Update to 0.17.40.
>   gnu: python-schema-salad: Update to 8.4.20230927144413.
>   gnu: Add python-cwlformat.
>   gnu: Add python-cwl-upgrader.
>   gnu: Add python-cwl-utils.
>   gnu: cwltool: Update to 3.1.20230601100705.

I don’t see it at qa.guix, but if it builds for you, and if the
dependents of the 3 packages being upgraded work fine, please go ahead!

Ludo’.
Arun Isaac Nov. 23, 2023, 12:35 a.m. UTC | #2 
Hi Ludo,

Unfortunately, the upgrade of python-ruamel.yaml breaks conda. We'll
have to upgrade conda too before this patchset can be pushed. And,
that's quite a major upgrade.

Regards,
Arun