From patchwork Sun Oct 22 22:27:03 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Arun Isaac X-Patchwork-Id: 1898 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 5F64027BBEA; Sun, 22 Oct 2023 23:28:45 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id CADE427BBE2 for ; Sun, 22 Oct 2023 23:28:43 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1qugw0-0007ag-L7; Sun, 22 Oct 2023 18:28:36 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qugvy-0007aI-D4 for guix-patches@gnu.org; Sun, 22 Oct 2023 18:28:34 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1qugvy-0003tx-5V for guix-patches@gnu.org; Sun, 22 Oct 2023 18:28:34 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1qugwQ-0000JJ-Dk for guix-patches@gnu.org; Sun, 22 Oct 2023 18:29:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#66690] [PATCH 0/7] Upgrade cwltool Resent-From: Arun Isaac Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 22 Oct 2023 22:29:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 66690 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 66690@debbugs.gnu.org Cc: Arun Isaac X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.16980137201163 (code B ref -1); Sun, 22 Oct 2023 22:29:02 +0000 Received: (at submit) by debbugs.gnu.org; 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bh=CkyZKRd90zffHpCFIkcTn72l9wNNvArYdAuSsf77JY0=; b=KKi8vQcYLxZSpR448t+Zef6OAE hM/bxRe6QJkSxWCbmxxO9nYLBamcfkaiHhBlTS+sJVpG8ttvuSzKscshDrJno3VIvxfUS2n9PY0ac 51wpmKsDDKwsmOC031YgMhD6BzP7FxKscKZP9DOYENH+NWsnmkcTGR3RL7H+eNbJBCFEEJ+q8H3f2 7GTa2InInd7yfydPVpriLOS4ftJ7eJlyzd+guRk3IFxMXZocCGR323SYBN8s6PzyCpc1IWcKopSaT tXk0KaDx+7KGI3Wx+bGWJSkVQz7+PZU6rc6XNQwVqY48OfBbIxk/Hr2w82nCFlqRBYR0mtgKrLU3h 3JeMTFeQ==; Received: from [192.168.2.1] (port=39220 helo=localhost.localdomain) by systemreboot.net with esmtpsa (TLS1.3) tls TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384 (Exim 4.96) (envelope-from ) id 1quguz-001g3h-1u; Sun, 22 Oct 2023 23:27:34 +0100 From: Arun Isaac Date: Sun, 22 Oct 2023 23:27:03 +0100 Message-ID: X-Mailer: git-send-email 2.41.0 MIME-Version: 1.0 Received-SPF: pass client-ip=139.59.75.54; envelope-from=arunisaac@systemreboot.net; helo=mugam.systemreboot.net X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches This patchset upgrades cwltool to the latest version. Arun Isaac (7): gnu: python-ruamel.yaml.clib: Update to 0.2.7. gnu: python-ruamel.yaml: Update to 0.17.40. gnu: python-schema-salad: Update to 8.4.20230927144413. gnu: Add python-cwlformat. gnu: Add python-cwl-upgrader. gnu: Add python-cwl-utils. gnu: cwltool: Update to 3.1.20230601100705. gnu/packages/bioinformatics.scm | 232 ++++++++++++++++++++++++-------- gnu/packages/serialization.scm | 9 +- 2 files changed, 178 insertions(+), 63 deletions(-) base-commit: fb3707762de577074c73d40575fe759095ef83e6