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[bug#58879,5/5] gnu: Add r-decontam.

Message ID 20221029231608.13909-5-madalinionel.patrascu@mdc-berlin.de
State New
Headers show
Series [bug#58879,1/5] gnu: Add r-deco. | expand

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Commit Message

Mădălin Ionel Patrașcu Oct. 29, 2022, 11:16 p.m. UTC 
* gnu/packages/bioconductor.scm (r-decontam): New variable.
---
 gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)
diff mbox series

Patch

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ce95a9e5af..e1175e46f1 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3220,6 +3220,33 @@  (define-public r-deconrnaseq
 profiles.")
     (license license:gpl2)))
 
+(define-public r-decontam
+  (package
+    (name "r-decontam")
+    (version "1.16.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "decontam" version))
+              (sha256
+               (base32
+                "1g9hcfcfnpq6z21069yw0pyzncwznmvxb2xalg4y6y1604dy98q9"))))
+    (properties `((upstream-name . "decontam")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-ggplot2
+           r-reshape2))
+    (native-inputs (list r-knitr))
+    (home-page "https://github.com/benjjneb/decontam")
+    (synopsis
+     "Identification of the contaminants in marker-gene and metagenomics data")
+    (description
+     "This package offers simple statistical identification of contaminating
+sequence features in marker-gene or metagenomics data.  Works on any kind of
+feature derived from environmental sequencing data (e.g. ASVs, OTUs, taxonomic
+groups, MAGs,...).  Requires DNA quantitation data or sequenced negative control
+samples.")
+    (license license:artistic2.0)))
+
 (define-public r-deconvr
   (package
     (name "r-deconvr")