From patchwork Sat Oct 29 23:16:04 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 44189 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 0862227BBEA; Sun, 30 Oct 2022 00:17:42 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS, URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id B040527BBE9 for ; Sun, 30 Oct 2022 00:17:41 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1oov4b-0007oe-DP; Sat, 29 Oct 2022 19:17:05 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oov4a-0007oB-1M for guix-patches@gnu.org; Sat, 29 Oct 2022 19:17:04 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1oov4Z-0000lb-Oa for guix-patches@gnu.org; Sat, 29 Oct 2022 19:17:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1oov4Z-0004lY-Ik; Sat, 29 Oct 2022 19:17:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#58879] [PATCH 1/5] gnu: Add r-deco. References: In-Reply-To: Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Sat, 29 Oct 2022 23:17:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 58879 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <58879@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 58879-submit@debbugs.gnu.org id=B58879.166708539818253 (code B ref 58879); Sat, 29 Oct 2022 23:17:03 +0000 Received: (at 58879) by debbugs.gnu.org; 29 Oct 2022 23:16:38 +0000 Received: from localhost ([127.0.0.1]:36872 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oov49-0004kG-SG for submit@debbugs.gnu.org; Sat, 29 Oct 2022 19:16:38 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:37099) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oov3z-0004j8-Uk for 58879@debbugs.gnu.org; Sat, 29 Oct 2022 19:16:31 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1667085381; x=1668899782; bh=T31B7AKngci+AZX yJYj8nKNMhrG9DylTCPt44klA/oc=; b=o1jmqv0hl9+EZjMjmQQhTxj6QqwkwKH gNIiZhZpVEAQwDlc1J6c8EGPXBmti7cIDEYqcFODznx5XdJ85r+9thpMLSG0k1W2 HG1BC7ApAVOLzk77CmZAi1ChaczAcRF2SeHKVh0/4ldv9vtZYs6Bh89Y2OZXxrC6 K/qMxuPaz3fk= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id CFBC9160285 for <58879@debbugs.gnu.org>; Sun, 30 Oct 2022 01:16:21 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.13; Sun, 30 Oct 2022 01:16:19 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Sun, 30 Oct 2022 01:16:04 +0200 Message-ID: <20221029231608.13909-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.38.0 MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27232.003 X-TM-AS-Result: No-10--3.903600-5.000000 X-TMASE-MatchedRID: 4r2MyAYFTnf/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCyF0m1zB5gVDMSiwizsgluQycO hvTXTlouSkIUZyUQUJxJTjjs9yT6Yo8WMkQWv6iXBcIE78YqRWvcUt5lc1lLgKIzdZS3ou0UTP8 tg4DLkTABnddxD6iH56p0ag3V6CSK9J4NtBwQegam6r4u4DLa6Z9ga+7DeSWiDEr/od9skEWUoy YJHVij73ZL+m4uHUJNZKCalsVmcQjWQPYq1JOarY9u3lK2/Yrn87HRNT0KLkg== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.903600-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27232.003 X-TM-SNTS-SMTP: 4935422E5A95BA986D2DA5ED2996C2C9BCD6A4D450CE77C049E6B09DE4C854C42002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Sender: "Guix-patches" Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-deco): New variable. --- gnu/packages/bioconductor.scm | 42 +++++++++++++++++++++++++++++++++++ 1 file changed, 42 insertions(+) base-commit: ac51b9c86d58cfdb13ee643a2fdc8e979939a260 diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index b8535250f9..2f2268e5e6 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3075,6 +3075,48 @@ (define-public r-decipher biological sequences.") (license license:gpl3))) +(define-public r-deco + (package + (name "r-deco") + (version "1.12.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "deco" version)) + (sha256 + (base32 + "18n5zgln33c79jbjzjlivs8ihyg8zci6minfqlvagxgzcpa67k0m")))) + (properties `((upstream-name . "deco"))) + (build-system r-build-system) + (propagated-inputs + (list r-ade4 + r-annotationdbi + r-biobase + r-biocparallel + r-biocstyle + r-cluster + r-foreign + r-gdata + r-ggplot2 + r-gplots + r-gridextra + r-limma + r-locfit + r-made4 + r-rcolorbrewer + r-reshape2 + r-scatterplot3d + r-sfsmisc + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/fjcamlab/deco") + (synopsis "Decomposing heterogeneous cohorts using omic data profiling") + (description + "The package discovers differential features in hetero- and homogeneous omic +data by a two-step method including subsampling @code{LIMMA} and @code{NSCA}. +@code{DECO} reveals feature associations to hidden subclasses not exclusively +related to higher deregulation levels.") + (license (license:fsdg-compatible "GPL (>=3)")))) + (define-public r-deconvr (package (name "r-deconvr") From patchwork Sat Oct 29 23:16:05 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 44190 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id B8BA127BBEB; Sun, 30 Oct 2022 00:17:48 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS, URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id ACF0F27BBE9 for ; Sun, 30 Oct 2022 00:17:47 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1oov4a-0007oC-52; Sat, 29 Oct 2022 19:17:04 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oov4Y-0007nU-KG for guix-patches@gnu.org; Sat, 29 Oct 2022 19:17:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1oov4Y-0000lD-Ca for guix-patches@gnu.org; Sat, 29 Oct 2022 19:17:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1oov4X-0004kz-QR; Sat, 29 Oct 2022 19:17:01 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#58879] [PATCH 2/5] gnu: Add r-decomplexdisease. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Sat, 29 Oct 2022 23:17:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 58879 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <58879@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 58879-submit@debbugs.gnu.org id=B58879.166708539118218 (code B ref 58879); Sat, 29 Oct 2022 23:17:01 +0000 Received: (at 58879) by debbugs.gnu.org; 29 Oct 2022 23:16:31 +0000 Received: from localhost ([127.0.0.1]:36864 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oov43-0004jh-0F for submit@debbugs.gnu.org; Sat, 29 Oct 2022 19:16:31 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:41079) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oov3z-0004j7-Up for 58879@debbugs.gnu.org; Sat, 29 Oct 2022 19:16:29 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1667085380; x=1668899781; bh=4EmzJDjbxAbuIBuIVnNiwKhFnpQPHyluaO1zr/tNaEA=; b=QECzIY/pD/eU xW6B+gSTGMvBCbc1v2cdvg423NA/hUHL1wJ/JyDagLovJAL2mqkVOzGMc/FPyjhL Izv6DTOy72uQFyB2aTx44Cs8fJLnGIvedJixYFERFWJrbyAQt0paa7kdD+hVQkfM o+YEfL/IX1IcIv/W1kFELwS/O3mn4jo= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id C6ECA160281 for <58879@debbugs.gnu.org>; Sun, 30 Oct 2022 01:16:20 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.13; Sun, 30 Oct 2022 01:16:20 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Sun, 30 Oct 2022 01:16:05 +0200 Message-ID: <20221029231608.13909-2-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.38.0 In-Reply-To: <20221029231608.13909-1-madalinionel.patrascu@mdc-berlin.de> References: <20221029231608.13909-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27232.003 X-TM-AS-Result: No-10--0.560700-5.000000 X-TMASE-MatchedRID: /+von0vPuFH/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOU8ftiyKjZreCG 89wh97wnRRa406V/YwyBUGewL2YXt8Z8zsjIitoJnVTWWiNp+v8XjfR3d0weRj3jhzzlBjmINiX Xa6IFs0GRXJNeRN9ofxUuGt+MS2uwULz7LbSkB2Srm7DrUlmNkIAy6p60ZV62fJ5/bZ6npdjKay T/BQTiGvoYGtXkdu6SS0V1OOYp94lZS23r1DHTZaCAOOpo8av4BWwUQaypcuwGVBet5pA2MSVl3 /KKbhPd3koVUK0jQldVMmX8H99qGJKLfYdEgSybtOdWe/Uk/vuwZO9kmaWWvP8+E8vSQCkfySOb 56URxsg= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--0.560700-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27232.003 X-TM-SNTS-SMTP: D95AAB1232769EEA17AF7B3A9CD84428961D12AE3A28A29D9A393517638A23932002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Sender: "Guix-patches" Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-decomplexdisease): New variable. --- gnu/packages/bioconductor.scm | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 2f2268e5e6..809ba69bc3 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3117,6 +3117,39 @@ (define-public r-deco related to higher deregulation levels.") (license (license:fsdg-compatible "GPL (>=3)")))) +(define-public r-decomplexdisease + (package + (name "r-decomplexdisease") + (version "1.16.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "DEComplexDisease" version)) + (sha256 + (base32 + "09a967x1rnv7byjwh29ngjhs67rgg27zblmlzx6pyqlwy5jsp89d")))) + (properties `((upstream-name . "DEComplexDisease"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocparallel + r-complexheatmap + r-deseq2 + r-edger + r-rcpp + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/DEComplexDisease") + (synopsis "Investigations of complex diseases by bi-clustering analysis") + (description + "@code{DEComplexDisease} is designed to find the @acronym{DEGs, Differential +Expressed Genes} for complex disease, which is characterized by the heterogeneous +genomic expression profiles. Different from the established DEG analysis tools, +it does not assume the patients of complex diseases to share the common DEGs. +By applying a bi-clustering algorithm, @code{DEComplexDisease} finds the DEGs +shared by as many patients. Applying the @code{DEComplexDisease} analysis +results, users are possible to find the patients affected by the same mechanism +based on the shared signatures.") + (license license:gpl3))) + (define-public r-deconvr (package (name "r-deconvr") From patchwork Sat Oct 29 23:16:06 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 44191 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 87FE027BBEB; Sun, 30 Oct 2022 00:18:02 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS, URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 96C5327BBE9 for ; Sun, 30 Oct 2022 00:18:01 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1oov4a-0007oN-Ml; Sat, 29 Oct 2022 19:17:04 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oov4Z-0007nb-90 for guix-patches@gnu.org; Sat, 29 Oct 2022 19:17:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1oov4Y-0000lK-Te for guix-patches@gnu.org; Sat, 29 Oct 2022 19:17:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1oov4Y-0004lF-N4; Sat, 29 Oct 2022 19:17:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#58879] [PATCH 3/5] gnu: Add r-decomptumor2sig. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Sat, 29 Oct 2022 23:17:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 58879 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <58879@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 58879-submit@debbugs.gnu.org id=B58879.166708539718239 (code B ref 58879); Sat, 29 Oct 2022 23:17:02 +0000 Received: (at 58879) by debbugs.gnu.org; 29 Oct 2022 23:16:37 +0000 Received: from localhost ([127.0.0.1]:36868 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oov49-0004k0-0S for submit@debbugs.gnu.org; Sat, 29 Oct 2022 19:16:37 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:36683) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oov41-0004jC-BS for 58879@debbugs.gnu.org; Sat, 29 Oct 2022 19:16:30 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1667085383; x=1668899784; bh=MCyD5h/YxxWmGordmKncozOCF1lxDu/5fXVLKitlz2Q=; b=Vzlc79lsBfhy +y0z9gvM9Fif2ltFR1VT/X9Hw0Hvf+cUAzlpauIyJkoWqvEzJ9jWPR22sFHkr9i/ WHp8NW/R1cxQxbbNNaibgwRhAdcLOUJZd3laS3+t8RzpW2btgJGeFKTq+ZSuoJI3 zExe2IMYlkSMv1vzO5J9zM8IDVuamis= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 2904716029B for <58879@debbugs.gnu.org>; Sun, 30 Oct 2022 01:16:23 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.13; Sun, 30 Oct 2022 01:16:20 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Sun, 30 Oct 2022 01:16:06 +0200 Message-ID: <20221029231608.13909-3-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.38.0 In-Reply-To: <20221029231608.13909-1-madalinionel.patrascu@mdc-berlin.de> References: <20221029231608.13909-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27232.003 X-TM-AS-Result: No-10--3.859500-5.000000 X-TMASE-MatchedRID: 4r2MyAYFTnf/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOU8ftiyKjZrf3K 2YuhoY97RRa406V/YwyBUGewL2YXt8Z8zsjIitoJnVTWWiNp+v9lRzZAkKRGDa9j7aNnpjtlfIv PJGZ/sqeI0Ejneva935soi2XrUn/Jn6KdMrRsL14qtq5d3cxkNTkrFvPK8AqoFvyBafJ65+8O6M Az4PC+kHQcuIdj0AcEQw6NRcO5KWla1XM3GsFyNPfE4x4lcm5UfnLXRZ9cYIWSclNWa7K5guQe3 Rh0fyEQx6Xh3Vy4y2+O91s7FwLn8xC2a7GIAOqG8odyTXpQo3UZHwBcdw5+Mg== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.859500-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27232.003 X-TM-SNTS-SMTP: 71C31D2CFBE8C45CE80C2BBF02D2AEF069BC461DCE3B28BB23832AB6149ADF502002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Sender: "Guix-patches" Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-decomptumor2sig): New variable. --- gnu/packages/bioconductor.scm | 43 +++++++++++++++++++++++++++++++++++ 1 file changed, 43 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 809ba69bc3..7f6ba37bf8 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3150,6 +3150,49 @@ (define-public r-decomplexdisease based on the shared signatures.") (license license:gpl3))) +(define-public r-decomptumor2sig + (package + (name "r-decomptumor2sig") + (version "2.12.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "decompTumor2Sig" version)) + (sha256 + (base32 + "04hg9bbga2s8scjxfd8wjlmr45nzzvh8d6gr0w929sybx4nj2qz6")))) + (properties `((upstream-name . "decompTumor2Sig"))) + (build-system r-build-system) + (inputs (list perl)) ;script/extractSpecColumns.pl + (propagated-inputs + (list r-biocgenerics + r-biostrings + r-bsgenome-hsapiens-ucsc-hg19 + r-data-table + r-genomeinfodb + r-genomicfeatures + r-genomicranges + r-ggplot2 + r-ggseqlogo + r-gridextra + r-matrix + r-plyr + r-quadprog + r-readxl + r-s4vectors + r-summarizedexperiment + r-txdb-hsapiens-ucsc-hg19-knowngene + r-variantannotation)) + (native-inputs (list r-knitr)) + (home-page "https://rmpiro.net/decompTumor2Sig/") + (synopsis "Decomposition of individual tumors into mutational signatures") + (description + "The package uses quadratic programming for signature refitting, i.e., to +decompose the mutation catalog from an individual tumor sample into a set of given +mutational signatures (either Alexandrov-model signatures or Shiraishi-model +signatures), computing weights that reflect the contributions of the signatures +to the mutation load of the tumor.") + (license license:gpl2))) + (define-public r-deconvr (package (name "r-deconvr") From patchwork Sat Oct 29 23:16:07 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 44187 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id E306727BBEA; Sun, 30 Oct 2022 00:17:34 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS, URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 6054F27BBE9 for ; Sun, 30 Oct 2022 00:17:34 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1oov4a-0007oQ-VK; Sat, 29 Oct 2022 19:17:04 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oov4Z-0007nj-HZ for guix-patches@gnu.org; Sat, 29 Oct 2022 19:17:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1oov4Z-0000lP-9h for guix-patches@gnu.org; Sat, 29 Oct 2022 19:17:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1oov4Y-0004l9-AT; Sat, 29 Oct 2022 19:17:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#58879] [PATCH 4/5] gnu: Add r-deconrnaseq. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Sat, 29 Oct 2022 23:17:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 58879 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <58879@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 58879-submit@debbugs.gnu.org id=B58879.166708539718231 (code B ref 58879); Sat, 29 Oct 2022 23:17:02 +0000 Received: (at 58879) by debbugs.gnu.org; 29 Oct 2022 23:16:37 +0000 Received: from localhost ([127.0.0.1]:36866 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oov48-0004jy-Gi for submit@debbugs.gnu.org; Sat, 29 Oct 2022 19:16:36 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:52727) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oov40-0004jA-GS for 58879@debbugs.gnu.org; Sat, 29 Oct 2022 19:16:30 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1667085382; x=1668899783; bh=l1kktdKPINODVHyjF2ik+xD38Eat+5AYiVQlp2hLK+M=; b=F6aiVqIX6lOR Gkg+Qb+XJsb1dF/1nZdV87lZrZA+2Bi4YV28yiBabcvm+ZSfDwCYngx66bbeVfzy /QoEOV+ZqymjnnZlIwmQAEe1oiVnY+XcHAU1u0z4pMzdu/d3bc6457OoAeB+RGHm buZcwdTwi0cqSc7E8f+IPihvU47PKBE= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 7AFE6160289 for <58879@debbugs.gnu.org>; Sun, 30 Oct 2022 01:16:22 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.13; Sun, 30 Oct 2022 01:16:20 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Sun, 30 Oct 2022 01:16:07 +0200 Message-ID: <20221029231608.13909-4-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.38.0 In-Reply-To: <20221029231608.13909-1-madalinionel.patrascu@mdc-berlin.de> References: <20221029231608.13909-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27232.003 X-TM-AS-Result: No-10--1.805400-5.000000 X-TMASE-MatchedRID: RtHHqK+8YWP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCyMIFkWj5wv8FO9mDgDAyY4ngI gpj8eDcAZ1CdBJOsoY8RB0bsfrpPI34T9cYMsdwycQ09UKur+XU0Y9bxeAv1e/esXB6RL6nBbtj +HcvQF4SncHObVpDD1GKiSth1WRRTfrw/cllTbzYz83bikuHl1Cajwrb+6Nh/cUke23u350xU7O JY7bdPeD9iv/sJMsVc7Oyi/ulxQeKUgZdIaXg4f X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--1.805400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27232.003 X-TM-SNTS-SMTP: 30A783031B9FF05F41C75B013A8B07E9D6CC7F50729AC0C8F1451EEF570A61F12002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Sender: "Guix-patches" Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-deconrnaseq): New variable. --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 7f6ba37bf8..ce95a9e5af 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3193,6 +3193,33 @@ (define-public r-decomptumor2sig to the mutation load of the tumor.") (license license:gpl2))) +(define-public r-deconrnaseq + (package + (name "r-deconrnaseq") + (version "1.38.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "DeconRNASeq" version)) + (sha256 + (base32 + "10smk88srxm58hli0fhkdfd6l5z02q58xc9mww39gkn71y0127k6")))) + (properties `((upstream-name . "DeconRNASeq"))) + (build-system r-build-system) + (propagated-inputs + (list r-ggplot2 + r-limsolve + r-pcamethods)) + (home-page "https://bioconductor.org/packages/DeconRNASeq") + (synopsis + "Deconvolution of heterogeneous tissue samples for mRNA-Seq data") + (description + "@code{DeconSeq} is an R package for deconvolution of heterogeneous tissues +based on mRNA-Seq data. It models the expression levels from heterogeneous cell +populations in mRNA-Seq as the weighted average of expression from different +constituting cell types and predicted cell type proportions of single expression +profiles.") + (license license:gpl2))) + (define-public r-deconvr (package (name "r-deconvr") From patchwork Sat Oct 29 23:16:08 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 44188 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 0919627BBEA; Sun, 30 Oct 2022 00:17:37 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS, URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id B2B5927BBE9 for ; Sun, 30 Oct 2022 00:17:36 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1oov4b-0007oc-6A; Sat, 29 Oct 2022 19:17:05 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oov4Z-0007ni-Fc for guix-patches@gnu.org; Sat, 29 Oct 2022 19:17:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1oov4Z-0000lO-80 for guix-patches@gnu.org; Sat, 29 Oct 2022 19:17:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1oov4Z-0004lN-2h; Sat, 29 Oct 2022 19:17:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#58879] [PATCH 5/5] gnu: Add r-decontam. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Sat, 29 Oct 2022 23:17:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 58879 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <58879@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 58879-submit@debbugs.gnu.org id=B58879.166708539818247 (code B ref 58879); Sat, 29 Oct 2022 23:17:03 +0000 Received: (at 58879) by debbugs.gnu.org; 29 Oct 2022 23:16:38 +0000 Received: from localhost ([127.0.0.1]:36870 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oov49-0004k8-HY for submit@debbugs.gnu.org; Sat, 29 Oct 2022 19:16:37 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:45429) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oov42-0004jD-0R for 58879@debbugs.gnu.org; Sat, 29 Oct 2022 19:16:30 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1667085384; x=1668899785; bh=V+May+/9ZGN/h3NI11dXIR50+yGjpwMrxCYVWQ+N/vs=; b=k+CdMPm+Wrwx i1nwjs3v7dk4tHJcH3+ShPNi7neo/aHfnoTreJJ3Hnp2L+3jjhB9h8bASgI9ZXMX SO/vphIIJidOyOWWplSCr9pXntOOyi8IPj+MsaYv6MOpFQaR+uMLm/4JiHG3rS5z M0mi94CK7saXKSZT5US0fp54bMaWehg= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 023FC1602AB for <58879@debbugs.gnu.org>; Sun, 30 Oct 2022 01:16:24 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.13; Sun, 30 Oct 2022 01:16:20 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Sun, 30 Oct 2022 01:16:08 +0200 Message-ID: <20221029231608.13909-5-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.38.0 In-Reply-To: <20221029231608.13909-1-madalinionel.patrascu@mdc-berlin.de> References: <20221029231608.13909-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27232.003 X-TM-AS-Result: No-10--2.752400-5.000000 X-TMASE-MatchedRID: toN6SH028bX/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCwh0c5jiy2jH3l7KG7hOkirA1M Y935OL0nF+KCpGE37CJsoi2XrUn/Jn6KdMrRsL14qtq5d3cxkNRqXnrxrKCOXtj18uVesdaNaxm SJZELxSrDyyuNdfv4R5gzrfwKPQd3SHy8Zz1tb+uRYUXlXeFyJQJAaGZjnh5hv3KkqoZhcn4wLi i/ChXPlDUEkBTZ8vOLxlyTCXQR4xioA5PA4dQuxuYpJR2kheXd+3BndfXUhXQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.752400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27232.003 X-TM-SNTS-SMTP: 4CA75336DF95711E6E4DC2AC6B24EA9C7CFD8897B7B8F9FA89187F88DF9427C32002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Sender: "Guix-patches" Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-decontam): New variable. --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ce95a9e5af..e1175e46f1 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3220,6 +3220,33 @@ (define-public r-deconrnaseq profiles.") (license license:gpl2))) +(define-public r-decontam + (package + (name "r-decontam") + (version "1.16.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "decontam" version)) + (sha256 + (base32 + "1g9hcfcfnpq6z21069yw0pyzncwznmvxb2xalg4y6y1604dy98q9")))) + (properties `((upstream-name . "decontam"))) + (build-system r-build-system) + (propagated-inputs + (list r-ggplot2 + r-reshape2)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/benjjneb/decontam") + (synopsis + "Identification of the contaminants in marker-gene and metagenomics data") + (description + "This package offers simple statistical identification of contaminating +sequence features in marker-gene or metagenomics data. Works on any kind of +feature derived from environmental sequencing data (e.g. ASVs, OTUs, taxonomic +groups, MAGs,...). Requires DNA quantitation data or sequenced negative control +samples.") + (license license:artistic2.0))) + (define-public r-deconvr (package (name "r-deconvr")