@@ -1877,6 +1877,52 @@ (define-public r-agilp
;; GPLv3.
(license license:gpl3)))
+(define-public r-airpart
+ (package
+ (name "r-airpart")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "airpart" version))
+ (sha256
+ (base32
+ "0ljankgvgf8rby4z340wxx8v7acs9yz955p3a40jl6y8rz1svc06"))))
+ (properties `((upstream-name . "airpart")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-apeglm
+ r-clue
+ r-complexheatmap
+ r-dplyr
+ r-dynamictreecut
+ r-emdbook
+ r-forestplot
+ r-ggplot2
+ r-lpsolve
+ r-matrixstats
+ r-mclust
+ r-pbapply
+ r-plyr
+ r-rcolorbrewer
+ r-rlang
+ r-s4vectors
+ r-scater
+ r-singlecellexperiment
+ r-smurf
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/airpart")
+ (synopsis "Differential cell-type-specific allelic imbalance")
+ (description
+ "The @code{airpart} package identifies sets of genes displaying differential
+cell-type-specific allelic imbalance across cell types or states, utilizing
+single-cell allelic counts. It makes use of a generalized fused lasso with
+binomial observations of allelic counts to partition cell types by their allelic
+imbalance. Alternatively, a nonparametric method for partitioning cell types
+is offered. The package includes a number of visualizations and quality control
+functions for examining single cell allelic imbalance datasets.")
+ (license license:gpl2)))
+
(define-public r-aneufinder
(package
(name "r-aneufinder")