diff mbox series

[bug#64150,24/24] gnu: bioruby: Update to 2.0.4.

Message ID f96f3de6d02bab2cc02570b26b74a0dccbe63448.1687087731.git.mail@cbaines.net
State New
Headers show
Series Various changes to support updating the default ruby. | expand

Commit Message

Christopher Baines June 18, 2023, 11:28 a.m. UTC 
* gnu/packages/bioinformatics.scm (bioruby): Update to 2.0.4.
[arguments]: Update style.
---
 gnu/packages/bioinformatics.scm | 32 ++++++++++++++++----------------
 1 file changed, 16 insertions(+), 16 deletions(-)
diff mbox series

Patch

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9e356cba5d..4edcc28d12 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10876,34 +10876,34 @@  (define-public bio-blastxmlparser
 (define-public bioruby
   (package
     (name "bioruby")
-    (version "1.5.2")
+    (version "2.0.4")
     (source
      (origin
        (method url-fetch)
        (uri (rubygems-uri "bio" version))
        (sha256
         (base32
-         "1d56amdsjv1mag7m6gv2w0xij8hqx1v5xbdjsix8sp3yp36m7938"))))
+         "08aknxk2ingwscwfqpw5vnax6jpk1sxfaialravladb63hcl8dx9"))))
     (build-system ruby-build-system)
     (propagated-inputs
      (list ruby-libxml))
     (native-inputs
      (list which))  ; required for test phase
     (arguments
-     `(#:phases
-       (modify-phases %standard-phases
-         (add-before 'build 'patch-test-command
-          (lambda _
-            (substitute* '("test/functional/bio/test_command.rb")
-              (("/bin/sh") (which "sh")))
-            (substitute* '("test/functional/bio/test_command.rb")
-              (("/bin/ls") (which "ls")))
-            (substitute* '("test/functional/bio/test_command.rb")
-              (("which") (which "which")))
-            (substitute* '("test/functional/bio/test_command.rb",
-                           "test/data/command/echoarg2.sh")
-              (("/bin/echo") (which "echo")))
-            #t)))))
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'build 'patch-test-command
+            (lambda _
+              (substitute* '("test/functional/bio/test_command.rb")
+                (("/bin/sh") (which "sh")))
+              (substitute* '("test/functional/bio/test_command.rb")
+                (("/bin/ls") (which "ls")))
+              (substitute* '("test/functional/bio/test_command.rb")
+                (("which") (which "which")))
+              (substitute* '("test/functional/bio/test_command.rb"
+                             "test/data/command/echoarg2.sh")
+                (("/bin/echo") (which "echo"))))))))
     (synopsis "Ruby library, shell and utilities for bioinformatics")
     (description "BioRuby comes with a comprehensive set of Ruby development
 tools and libraries for bioinformatics and molecular biology.  BioRuby has