@@ -4422,6 +4422,52 @@ (define-public r-cellid
enrichment in single cell data.")
(license license:gpl3)))
+(define-public r-coregx
+ (package
+ (name "r-coregx")
+ (version "2.4.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "CoreGx" version))
+ (sha256
+ (base32 "09pv117g8sxhrij960mparrz1r9vx8s20gmpvn1h667kl1bc0jm9"))))
+ (properties `((upstream-name . "CoreGx")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-bench
+ r-biobase
+ r-biocgenerics
+ r-biocparallel
+ r-bumpymatrix
+ r-checkmate
+ r-crayon
+ r-data-table
+ r-glue
+ r-lsa
+ r-matrixgenerics
+ r-multiassayexperiment
+ r-piano
+ r-rlang
+ r-s4vectors
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/CoreGx")
+ (synopsis
+ "Classes and functions to serve as the basis for other Gx packages")
+ (description
+ "This package provides a collection of functions and classes which serve as
+the foundation for our lab's suite of R packages, such as PharmacoGx and RadioGx.
+It was created to abstract shared functionality from other lab package releases
+to increase ease of maintainability and reduce code repetition in current and
+future Gx suite programs. Major features include a @code{CoreSet} class, from
+which RadioSet and PharmacoSet are derived, along with get and set methods for
+each respective slot. Additional functions related to fitting and plotting dose
+response curves, quantifying statistical correlation and calculating
+@acronym{AUC, area under the curve} or @acronym{SF, survival fraction} are
+included.")
+ (license license:gpl3+)))
+
(define-public r-coverageview
(package
(name "r-coverageview")