diff mbox series

[bug#47171,10/10] gnu: r-delayedarray: Move to (gnu packages bioconductor).

Message ID 20210315180904.8346-10-zimon.toutoune@gmail.com
State Accepted
Headers show
Series Move some Bioconductor packages to (gnu packages bioconductor). | expand

Checks

Context Check Description
cbaines/comparison success View comparision
cbaines/git branch success View Git branch
cbaines/applying patch success View Laminar job
cbaines/issue success View issue

Commit Message

Simon Tournier March 15, 2021, 6:09 p.m. UTC 
* gnu/packages/bioinformatics.scm (r-delayedarray): Move from here...
* gnu/packages/bioconductor.scm (r-delayedarray): ...to here.
---
 gnu/packages/bioconductor.scm   | 33 +++++++++++++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 33 ---------------------------------
 2 files changed, 33 insertions(+), 33 deletions(-)
diff mbox series

Patch

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c659bdd09e..9212165706 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1212,6 +1212,39 @@  data.  In addition, provides numerous plotting functions for commonly
 used visualizations.")
    (license license:artistic2.0)))
 
+(define-public r-delayedarray
+  (package
+    (name "r-delayedarray")
+    (version "0.16.2")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "DelayedArray" version))
+              (sha256
+               (base32
+                "09lpj951v1afxkrnjvnhzp4qgklq23ykdwlny7k1lyfcdy9q6wm0"))))
+    (properties
+     `((upstream-name . "DelayedArray")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biocgenerics" ,r-biocgenerics)
+       ("r-s4vectors" ,r-s4vectors)
+       ("r-iranges" ,r-iranges)
+       ("r-matrix" ,r-matrix)
+       ("r-matrixgenerics" ,r-matrixgenerics)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://bioconductor.org/packages/DelayedArray")
+    (synopsis "Delayed operations on array-like objects")
+    (description
+     "Wrapping an array-like object (typically an on-disk object) in a
+@code{DelayedArray} object allows one to perform common array operations on it
+without loading the object in memory.  In order to reduce memory usage and
+optimize performance, operations on the object are either delayed or executed
+using a block processing mechanism.  Note that this also works on in-memory
+array-like objects like @code{DataFrame} objects (typically with Rle columns),
+@code{Matrix} objects, and ordinary arrays and data frames.")
+    (license license:artistic2.0)))
+
 (define-public r-bluster
   (package
    (name "r-bluster")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 05805d1a8b..bc342b5de8 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7691,39 +7691,6 @@  including VCF header and contents in RDF and JSON.")
     (home-page "https://github.com/vcflib/bio-vcf")
     (license license:expat)))
 
-(define-public r-delayedarray
-  (package
-    (name "r-delayedarray")
-    (version "0.16.2")
-    (source (origin
-              (method url-fetch)
-              (uri (bioconductor-uri "DelayedArray" version))
-              (sha256
-               (base32
-                "09lpj951v1afxkrnjvnhzp4qgklq23ykdwlny7k1lyfcdy9q6wm0"))))
-    (properties
-     `((upstream-name . "DelayedArray")))
-    (build-system r-build-system)
-    (propagated-inputs
-     `(("r-biocgenerics" ,r-biocgenerics)
-       ("r-s4vectors" ,r-s4vectors)
-       ("r-iranges" ,r-iranges)
-       ("r-matrix" ,r-matrix)
-       ("r-matrixgenerics" ,r-matrixgenerics)))
-    (native-inputs
-     `(("r-knitr" ,r-knitr)))
-    (home-page "https://bioconductor.org/packages/DelayedArray")
-    (synopsis "Delayed operations on array-like objects")
-    (description
-     "Wrapping an array-like object (typically an on-disk object) in a
-@code{DelayedArray} object allows one to perform common array operations on it
-without loading the object in memory.  In order to reduce memory usage and
-optimize performance, operations on the object are either delayed or executed
-using a block processing mechanism.  Note that this also works on in-memory
-array-like objects like @code{DataFrame} objects (typically with Rle columns),
-@code{Matrix} objects, and ordinary arrays and data frames.")
-    (license license:artistic2.0)))
-
 (define-public r-summarizedexperiment
   (package
     (name "r-summarizedexperiment")