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Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 15 Mar 2021 18:10:06 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 47171 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 47171@debbugs.gnu.org Cc: zimoun Received: via spool by 47171-submit@debbugs.gnu.org id=B47171.161583177418462 (code B ref 47171); Mon, 15 Mar 2021 18:10:06 +0000 Received: (at 47171) by debbugs.gnu.org; 15 Mar 2021 18:09:34 +0000 Received: from localhost ([127.0.0.1]:36961 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lLren-0004nd-Fk for submit@debbugs.gnu.org; Mon, 15 Mar 2021 14:09:33 -0400 Received: from mail-wr1-f51.google.com ([209.85.221.51]:41093) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lLreh-0004ld-Qd for 47171@debbugs.gnu.org; Mon, 15 Mar 2021 14:09:28 -0400 Received: by mail-wr1-f51.google.com with SMTP id f12so9145506wrx.8 for <47171@debbugs.gnu.org>; Mon, 15 Mar 2021 11:09:27 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=nfj2rilQWJptQ5L9ZCZZc0numSUsh61ELXk+rityVDE=; b=qIulp7vGIici0cwRbFA1PuxsRCQtZQMyUfwNMAaLTH2OHAbNLBq6MyS0tZbcI/XSvL B+iWzHunhXxfuCZtebN08Eh9y3Zu6s2Evo2TIio+MGfa2iaF2k3QsZsYg6r8VjCoxwEV BgmTIOjRqLt5Dvd1leaOGP//38VsKUPvwUs1MPeRgRpO5hIfgenA9sOSLg7FyUAzYMA8 qngiGaCrhXHrqOOZwBA4X1BLCaujE73M/rR8Z3vvnlXlUurhHRjwBuDfzS+99DQ3igEX O//roDE7O8JIkTnY6+984aikC68mH2Kl1aYVXssEVtSYoXVHevLynXmmQV4gF7rO3T2m BHAw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=nfj2rilQWJptQ5L9ZCZZc0numSUsh61ELXk+rityVDE=; b=ZgUClj7qjbYntbMNakIC03jc6DLBmv7SY2N5T9AQxepm40d8c0JQxNNARRn1NZqIH4 3RL8NEIK0Kj9wadnxQK3CTxpt8bc403Ot0S7N6DpMsA9lsB3n+KqJzcxTXM7+1EwqNGG 6/ynz4+yL9xMRKwz30Fd2sfXyIur1s/Ttyz5bhX4Ju12LbgqeM3SIvSdEu8rYTYjk7Wx zsFohYsGWN6Ls3uktFWXXkgWvi6KHqiD5AKevzg2mpm3iCjJNEZUzr17om3paxroC+I/ pGcwYj3BI2h8ybot/jBIg65kQUEaa+drffjhWqBOn5s4Bej2CH5S+AOLGwmtzZUFjLoW jgzw== X-Gm-Message-State: AOAM533yNLjwK8TRAl16y7Is7sBHob+/3QI2sDQwY+9+ZK0Rn4Q700UC juG+AEIZVWsZSEcEGeqO2+OZw+qUtwU= X-Google-Smtp-Source: ABdhPJzLVKteQKX0y3EsKcbBnyo/+WhH6G+1UiTvTm8aoPKUitbVAr5VfQMw+P8RuzCGEqDIrGkBFw== X-Received: by 2002:a5d:6406:: with SMTP id z6mr893328wru.264.1615831762282; Mon, 15 Mar 2021 11:09:22 -0700 (PDT) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id s11sm438851wme.22.2021.03.15.11.09.21 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 15 Mar 2021 11:09:21 -0700 (PDT) From: zimoun Date: Mon, 15 Mar 2021 19:09:04 +0100 Message-Id: <20210315180904.8346-10-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.30.1 In-Reply-To: <20210315180904.8346-1-zimon.toutoune@gmail.com> References: <20210315180904.8346-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-delayedarray): Move from here... * gnu/packages/bioconductor.scm (r-delayedarray): ...to here. --- gnu/packages/bioconductor.scm | 33 +++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 33 --------------------------------- 2 files changed, 33 insertions(+), 33 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index c659bdd09e..9212165706 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1212,6 +1212,39 @@ data. In addition, provides numerous plotting functions for commonly used visualizations.") (license license:artistic2.0))) +(define-public r-delayedarray + (package + (name "r-delayedarray") + (version "0.16.2") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "DelayedArray" version)) + (sha256 + (base32 + "09lpj951v1afxkrnjvnhzp4qgklq23ykdwlny7k1lyfcdy9q6wm0")))) + (properties + `((upstream-name . "DelayedArray"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-s4vectors" ,r-s4vectors) + ("r-iranges" ,r-iranges) + ("r-matrix" ,r-matrix) + ("r-matrixgenerics" ,r-matrixgenerics))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/DelayedArray") + (synopsis "Delayed operations on array-like objects") + (description + "Wrapping an array-like object (typically an on-disk object) in a +@code{DelayedArray} object allows one to perform common array operations on it +without loading the object in memory. In order to reduce memory usage and +optimize performance, operations on the object are either delayed or executed +using a block processing mechanism. Note that this also works on in-memory +array-like objects like @code{DataFrame} objects (typically with Rle columns), +@code{Matrix} objects, and ordinary arrays and data frames.") + (license license:artistic2.0))) + (define-public r-bluster (package (name "r-bluster") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 05805d1a8b..bc342b5de8 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7691,39 +7691,6 @@ including VCF header and contents in RDF and JSON.") (home-page "https://github.com/vcflib/bio-vcf") (license license:expat))) -(define-public r-delayedarray - (package - (name "r-delayedarray") - (version "0.16.2") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "DelayedArray" version)) - (sha256 - (base32 - "09lpj951v1afxkrnjvnhzp4qgklq23ykdwlny7k1lyfcdy9q6wm0")))) - (properties - `((upstream-name . "DelayedArray"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biocgenerics" ,r-biocgenerics) - ("r-s4vectors" ,r-s4vectors) - ("r-iranges" ,r-iranges) - ("r-matrix" ,r-matrix) - ("r-matrixgenerics" ,r-matrixgenerics))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/DelayedArray") - (synopsis "Delayed operations on array-like objects") - (description - "Wrapping an array-like object (typically an on-disk object) in a -@code{DelayedArray} object allows one to perform common array operations on it -without loading the object in memory. In order to reduce memory usage and -optimize performance, operations on the object are either delayed or executed -using a block processing mechanism. Note that this also works on in-memory -array-like objects like @code{DataFrame} objects (typically with Rle columns), -@code{Matrix} objects, and ordinary arrays and data frames.") - (license license:artistic2.0))) - (define-public r-summarizedexperiment (package (name "r-summarizedexperiment")