mbox series

[bug#66690,v2,0/8] Upgrade cwltool

Message ID cover.1708029746.git.arunisaac@systemreboot.net
Headers show
Series Upgrade cwltool | expand

Message

Arun Isaac Feb. 15, 2024, 8:46 p.m. UTC 
In this patchset, I have updated cwltool once more to the latest version. And,
I have split out ruamel-yaml into two separate package variants so that conda
no longer breaks. I will push this patchset if it builds successfully on QA
without breaking other packages.

Arun Isaac (8):
  gnu: python-ruamel.yaml.clib: Update to 0.2.8.
  gnu: python-ruamel-yaml: Update to 0.18.6.
  gnu: python-schema-salad: Update to 8.5.20240102191335.
  gnu: Add python-cwlformat.
  gnu: Add python-cwl-upgrader.
  gnu: Add python-cwl-utils.
  gnu: Add python-spython.
  gnu: cwltool: Update to 3.1.20240112164112.

 gnu/packages/bioinformatics.scm     | 244 ++++++++++++++++++++--------
 gnu/packages/linux.scm              |  46 ++++++
 gnu/packages/package-management.scm |   3 +-
 gnu/packages/serialization.scm      |  21 ++-
 4 files changed, 240 insertions(+), 74 deletions(-)


base-commit: 5ad54df6b09b08b73453cf1071413693f053a0cc

Comments

Ludovic Courtès Feb. 18, 2024, 10:39 p.m. UTC | #1 
Hi Arun!

Arun Isaac <arunisaac@systemreboot.net> skribis:

> In this patchset, I have updated cwltool once more to the latest version. And,
> I have split out ruamel-yaml into two separate package variants so that conda
> no longer breaks. I will push this patchset if it builds successfully on QA
> without breaking other packages.

I skimmed over the patches and they LGTM.

Thanks,
Ludo’.
Arun Isaac Feb. 22, 2024, 1:16 p.m. UTC | #2 
Thanks, Ludo. I pushed this patchset after moving a couple of more
packages to the older python-ruamel-yaml-0.16.