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[bug#68934] Removed this package because there is a newer version in carn.scm

Message ID 565d03aa2020fd3a0825eea763d4c6843f44572d.1707130574.git.navid.afkhami@mdc-berlin.de
State New
Headers show
Series [bug#68934] Removed this package because there is a newer version in carn.scm | expand

Commit Message

nafkhamdc Feb. 5, 2024, 10:56 a.m. UTC 
Change-Id: I3effe7c3118a3ae447243239464cc1fe7f10e637
---
 gnu/packages/bioinformatics.scm | 33 ---------------------------------
 1 file changed, 33 deletions(-)


base-commit: 5a806face508cdfcd91e1eb1afb3ec38c002ec92
prerequisite-patch-id: 3a59afadab83198b19921e19197e26925523b4a3

Comments

nafkhamdc Feb. 5, 2024, 11:10 a.m. UTC | #1 
This package is actually different than the package in cran.scm . Hence, it should not be removed from bioinformatics.scm

 

Thanks!

 

- -  

Navid Afkhami

High Performance Computing (HPC)

Max Delbrück Center for Molecular Medicine (MDC)

Robert-Rössle-Straße 10, 13125 Berlin

Phone: +49 30 9406 1316

Email:   navid.afkhami@mdc-berlin.de
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Patch

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4db6987763..56709c0332 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11134,39 +11134,6 @@  (define-public r-projectils
 states in the the context of known, reference states.")
       (license license:gpl3))))
 
-(define-public r-presto
-  (let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad")
-        (revision "0"))
-    (package
-      (name "r-presto")
-      (version (git-version "1.0.0" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-               (url "https://github.com/immunogenomics/presto")
-               (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "1c3fmag4r4p2lvbvxlxyck9dvfw1prbwcl9665mmlx4a35750hk8"))))
-      (properties `((upstream . "presto")))
-      (build-system r-build-system)
-      (propagated-inputs
-       (list r-data-table
-             r-deseq2
-             r-dplyr
-             r-matrix
-             r-rcpp
-             r-rcpparmadillo
-             r-reshape2
-             r-rlang
-             r-tidyr))
-      (home-page "https://github.com/immunogenomics/presto")
-      (synopsis "Fast Functions for Differential Expression using Wilcox and AUC")
-      (description "This package performs a fast Wilcoxon rank sum test and
-auROC analysis.")
-      (license license:gpl3))))
-
 (define-public r-sccustomize
   (let ((commit "397374590dae2ccc0c560897dcd1ce4382c18798")
         (revision "1"))