diff mbox series

[bug#62881] gnu: Add r-demuxmix.

Message ID 20230416100948.59730-1-navid.afkhami@mdc-berlin.de
State New
Headers show
Series [bug#62881] gnu: Add r-demuxmix. | expand

Commit Message

nafkhamdc April 16, 2023, 10:09 a.m. UTC 
* gnu/packages/bioinformatics.scm (r-demuxmix): New variable.
---
 gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

Comments

Ricardo Wurmus April 17, 2023, 9:19 a.m. UTC | #1 
Applied, thank you!
diff mbox series

Patch

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 99cc056f9f..b5442dd0ad 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9632,6 +9632,36 @@  (define-public r-centipede
 information as possible.")
     (license (list license:gpl2+ license:gpl3+))))
 
+(define-public r-demuxmix
+  (let ((commit "09a7918ca6e0cd23e6bbaed2b97388bc499e248e")
+        (revision "1"))
+    (package
+      (name "r-demuxmix")
+      (version (git-version "1.1.1" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/huklein/demuxmix")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "03kfnns7m2447jsc3xplyv9qx8hvvdjmii7j837g3bb6smyxss96"))))
+      (properties `((upstream-name . "demuxmix")))
+      (build-system r-build-system)
+      (propagated-inputs (list r-ggplot2 r-gridextra r-mass r-matrix))
+      (native-inputs (list r-knitr))
+      (home-page "https://github.com/huklein/demuxmix")
+      (synopsis
+       "Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models")
+      (description
+       "This package is used for demultiplexing single-cell sequencing experiments of pooled cells.
+These cells are labeled with barcode oligonucleotides.  The package
+implements methods to fit regression mixture models for a probabilistic
+classification of cells, including multiplet detection.  Demultiplexing error
+rates can be estimated, and methods for quality control are provided.")
+      (license license:artistic2.0))))
+
 (define-public r-demultiplex
   (let ((commit "6e2a1422c8e6f418cfb271997eebc91f9195f299")
         (revision "1"))