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Resent-From: Navid Afkhami Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 16 Apr 2023 10:11:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 62881 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 62881@debbugs.gnu.org X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.168163982331019 (code B ref -1); Sun, 16 Apr 2023 10:11:02 +0000 Received: (at submit) by debbugs.gnu.org; 16 Apr 2023 10:10:23 +0000 Received: from localhost ([127.0.0.1]:50624 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pnzKw-00084F-LJ for submit@debbugs.gnu.org; Sun, 16 Apr 2023 06:10:23 -0400 Received: from lists.gnu.org ([209.51.188.17]:41152) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pnzKu-000845-G8 for submit@debbugs.gnu.org; Sun, 16 Apr 2023 06:10:21 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pnzKu-0003Cn-9b for guix-patches@gnu.org; Sun, 16 Apr 2023 06:10:20 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pnzKs-00039Y-3H for guix-patches@gnu.org; Sun, 16 Apr 2023 06:10:20 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1681639800; x=1683454201; bh=3ihJVrL8wHzzhQh yKGmIcH5gRbdPJcL4M+j3RVcG+lc=; b=Xyzyr/RR8V461DeD1IBFVux18/7KVLD EO7OM7/YOUpFCsVyjqOGESiKH9OkTBt57+bgCyrU0Dei6rTfxHq5aWUfXYzYkotK mDUKUJx2Mj0BHLUjFHW5hzmd193pK+vUQsTJsfI4v6wUul8oFx8jCxD9lKZ6Q+sR F1sNGchL4UeM= Received-SPF: Pass (mailfrom) identity=mailfrom; client-ip=141.80.113.62; helo=sw-it-p-ex4.mdc-berlin.net; envelope-from=navid.afkhami@mdc-berlin.de; receiver= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 8DF80A0144 for ; Sun, 16 Apr 2023 12:10:00 +0200 (CEST) Received: from localhost.localdomain (10.84.128.6) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.23; Sun, 16 Apr 2023 12:09:59 +0200 From: Navid Afkhami Date: Sun, 16 Apr 2023 12:09:48 +0200 Message-ID: <20230416100948.59730-1-navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 X-Originating-IP: [10.84.128.6] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27568.007 X-TM-AS-Result: No-10--5.003900-5.000000 X-TMASE-MatchedRID: a3KJLn6RIiJ6fjezFKxXHArcxrzwsv5uwTlc9CcHMZerwqxtE531VICu qghmtWfXXt3JNptef3p4Zvg4N7yewiq+GZ9ZHxIhuW77/y896sj4qCLIu0mtIMIubEPSkNnJwFC Vfj8B4z7klvPIaBvBZQp3Fx4qZRwngBfp8CCuth77yUNHgaQS/f+PhkHLJnPiYDnmdMm9y0eUg5 UD6AlF0sX4oKkYTfsImyiLZetSf8mfop0ytGwvXiq2rl3dzGQ1l3+bAt/YFVQYy9Xd3fYxwrnmG hOk8lBfdh+fkbqdmkXTOTnDb5Jeuh/BXqwE9HSW X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--5.003900-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27568.007 X-TM-SNTS-SMTP: D58CDEB21090EFE8DECDA1F578C5A0F9568BC3CE9A0F3A2D16272C2D9DA71D742002:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-demuxmix): New variable. --- gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 99cc056f9f..b5442dd0ad 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9632,6 +9632,36 @@ (define-public r-centipede information as possible.") (license (list license:gpl2+ license:gpl3+)))) +(define-public r-demuxmix + (let ((commit "09a7918ca6e0cd23e6bbaed2b97388bc499e248e") + (revision "1")) + (package + (name "r-demuxmix") + (version (git-version "1.1.1" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/huklein/demuxmix") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "03kfnns7m2447jsc3xplyv9qx8hvvdjmii7j837g3bb6smyxss96")))) + (properties `((upstream-name . "demuxmix"))) + (build-system r-build-system) + (propagated-inputs (list r-ggplot2 r-gridextra r-mass r-matrix)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/huklein/demuxmix") + (synopsis + "Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models") + (description + "This package is used for demultiplexing single-cell sequencing experiments of pooled cells. +These cells are labeled with barcode oligonucleotides. The package +implements methods to fit regression mixture models for a probabilistic +classification of cells, including multiplet detection. Demultiplexing error +rates can be estimated, and methods for quality control are provided.") + (license license:artistic2.0)))) + (define-public r-demultiplex (let ((commit "6e2a1422c8e6f418cfb271997eebc91f9195f299") (revision "1"))