@@ -9354,6 +9354,51 @@ (define r-rcppnumerical
@code{Rcpp}.")
(license license:gpl2+)))
+(define-public r-apalyzer
+ (package
+ (name "r-apalyzer")
+ (version "1.12.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "APAlyzer" version))
+ (sha256
+ (base32 "1iaz9ircfh5x3z5pibn5vnd4lbbr7m5ypk97xnizn22z41aqrxn3"))))
+ (properties `((upstream-name . "APAlyzer")))
+ (build-system r-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'install 'change-home-dir
+ (lambda _
+ ;; Change from /homeless-shelter to /tmp for write permission.
+ (setenv "HOME" "/tmp"))))))
+ (propagated-inputs
+ (list r-deseq2
+ r-dplyr
+ r-genomicalignments
+ r-genomicfeatures
+ r-genomicranges
+ r-ggplot2
+ r-ggrepel
+ r-hybridmtest
+ r-repmis
+ r-rsamtools
+ r-rsubread
+ r-rtracklayer
+ r-summarizedexperiment
+ r-tidyr
+ r-variantannotation))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/RJWANGbioinfo/APAlyzer/")
+ (synopsis "Toolkit for APA analysis using RNA-seq data")
+ (description
+ "The APAlyzer package performs @acronym{3'UTR, Three Prime Untranslated
+Region} @acronym{APA, Alternative polyadenylation}, Intronic APA and gene
+expression analysis using RNA-seq data.")
+ (license license:lgpl3)))
+
(define-public r-apeglm
(package
(name "r-apeglm")