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(license license:gpl2+))) +(define-public r-apalyzer + (package + (name "r-apalyzer") + (version "1.12.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "APAlyzer" version)) + (sha256 + (base32 "1iaz9ircfh5x3z5pibn5vnd4lbbr7m5ypk97xnizn22z41aqrxn3")))) + (properties `((upstream-name . "APAlyzer"))) + (build-system r-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-before 'install 'change-home-dir + (lambda _ + ;; Change from /homeless-shelter to /tmp for write permission. + (setenv "HOME" "/tmp")))))) + (propagated-inputs + (list r-deseq2 + r-dplyr + r-genomicalignments + r-genomicfeatures + r-genomicranges + r-ggplot2 + r-ggrepel + r-hybridmtest + r-repmis + r-rsamtools + r-rsubread + r-rtracklayer + r-summarizedexperiment + r-tidyr + r-variantannotation)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/RJWANGbioinfo/APAlyzer/") + (synopsis "Toolkit for APA analysis using RNA-seq data") + (description + "The APAlyzer package performs @acronym{3'UTR, Three Prime Untranslated +Region} @acronym{APA, Alternative polyadenylation}, Intronic APA and gene +expression analysis using RNA-seq data.") + (license license:lgpl3))) + (define-public r-apeglm (package (name "r-apeglm")