@@ -7600,6 +7600,56 @@ (define-public r-chromunity
Pore-C concatemers.")
(license license:gpl3))))
+(define-public r-pando
+ (package
+ (name "r-pando")
+ (version "1.0.1")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/quadbiolab/Pando")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0c83anzdrbvg47p9xns2bxpjlx5z328can3jmzilw6rygwp7hyii"))))
+ (properties `((upstream-name . "Pando")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-bayestestr
+ r-brms
+ r-foreach
+ r-genomicranges
+ r-ggplot2
+ r-ggpointdensity
+ r-ggraph
+ r-glmnetutils
+ r-iranges
+ r-irlba
+ r-matrix
+ r-motifmatchr
+ r-pals
+ r-patchwork
+ r-seurat
+ r-signac
+ r-sparsematrixstats
+ r-tfbstools
+ r-tidygraph
+ r-tidyverse
+ r-uwot
+ r-xgboost))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/quadbiolab/Pando")
+ (synopsis
+ "Inferring regulomes from multi-modal single-cell genomics data")
+ (description
+ "@code{Pando} leverages multi-modal single-cell measurements to infer gene
+regulatory networks using a flexible linear model-based framework. By modeling
+the relationship between TF-binding site pairs with the expression of target
+genes, @code{Pando} simultaneously infers gene modules and sets of regulatory
+regions for each transcription factor.")
+ (license license:expat)))
+
(define-public r-presto
(let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad")
(revision "0"))