From patchwork Wed Nov 9 03:13:29 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 44402 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id A171027BBEB; Wed, 9 Nov 2022 03:16:19 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS, URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 73ABF27BBE9 for ; Wed, 9 Nov 2022 03:16:18 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1osbZN-000848-Hz; Tue, 08 Nov 2022 22:16:05 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1osbZK-000834-Q0 for guix-patches@gnu.org; Tue, 08 Nov 2022 22:16:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1osbZK-0008O5-IG for guix-patches@gnu.org; Tue, 08 Nov 2022 22:16:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1osbZJ-0003im-IP; Tue, 08 Nov 2022 22:16:01 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#59142] [PATCH 1/3] gnu: Add r-pals. References: <444bff8aed1f443896b5f3ced07297fa@mdc-berlin.de> In-Reply-To: <444bff8aed1f443896b5f3ced07297fa@mdc-berlin.de> Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Wed, 09 Nov 2022 03:16:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 59142 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <59142@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 59142-submit@debbugs.gnu.org id=B59142.166796375914282 (code B ref 59142); Wed, 09 Nov 2022 03:16:01 +0000 Received: (at 59142) by debbugs.gnu.org; 9 Nov 2022 03:15:59 +0000 Received: from localhost ([127.0.0.1]:38555 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1osbZG-0003iH-G4 for submit@debbugs.gnu.org; Tue, 08 Nov 2022 22:15:58 -0500 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:34167) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1osbZE-0003hq-0i for 59142@debbugs.gnu.org; Tue, 08 Nov 2022 22:15:56 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1667963748; x=1669778149; bh=EpVSrIdA7Xnx3+K kzJyIFhsYEXLFmXgSEKe0D77K3IY=; b=pwu+i/VVs//eoaz0uwbvB4iDftRSqKl EfZC5bWetrkDYBObiWZZC1cI3iV79M4HRIPwkTRhp9DZF4wZ6C791xBgdVh12eH2 gyBaKIIzZGK6kAH9N969mIYYU30+UjccEilOkHHx5y+FjUfmana1I85AV71fXsL7 ZNuPX1gbYbfo= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id EBEBB3002E7 for <59142@debbugs.gnu.org>; Wed, 9 Nov 2022 04:15:47 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.13; Wed, 9 Nov 2022 04:15:47 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Wed, 9 Nov 2022 04:13:29 +0100 Message-ID: <20221109031331.12487-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.38.1 MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27252.004 X-TM-AS-Result: No-10--6.447900-5.000000 X-TMASE-MatchedRID: 2wfub8HDRfP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEIjG wx10ej9iRRa406V/YwyBUGewL2YXt8Z8zsjIitoJnVTWWiNp+v9y4VFP6muDhpbI+L60qto8qbs +nJ/tFJH53MzgUtcaKq6C7GFhIb12Wi8Qip68NgfdCok3ibXlQeuLFZZYlisfHxPMjOKY7A+u65 UDD0aDgsRB0bsfrpPI8edcQ1uyNCKU7rL13kdicOiCVmXS0Cy1pLSB495GUm0toIc8cvFbWVAnq 6B0t8JQ X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.447900-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27252.004 X-TM-SNTS-SMTP: 85A98B88D895477CDF919FD54D7BBFFDA99683CD056B242A8F57E0E048EE667E2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-pals): New variable. --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) base-commit: 7de6aa8a0abdb54727e1dd8f775802284b99e707 diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index eff789ba8d..7f5ad1faf3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1661,6 +1661,31 @@ (define-public r-pacman functions which can speed up workflow.") (license license:gpl2))) +(define-public r-pals + (package + (name "r-pals") + (version "1.7") + (source (origin + (method url-fetch) + (uri (cran-uri "pals" version)) + (sha256 + (base32 + "18pbivmqs9yqsb6p8anv42alny0njaq3dajibhzysax0b7rsk2js")))) + (properties `((upstream-name . "pals"))) + (build-system r-build-system) + (propagated-inputs + (list r-colorspace + r-dichromat + r-mapproj + r-maps)) + (native-inputs (list r-knitr)) + (home-page "https://kwstat.github.io/pals/") + (synopsis "Color palettes, color maps, and tools to evaluate them") + (description + "This package provides a comprehensive collection of color palettes, color +maps, and tools to evaluate them.") + (license license:gpl3))) + (define-public r-paralleldist (package (name "r-paralleldist") From patchwork Wed Nov 9 03:13:30 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 44404 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 07E0827BBE9; Wed, 9 Nov 2022 03:16:39 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS, URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 0832B27BBE9 for ; Wed, 9 Nov 2022 03:16:37 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1osbZL-00083U-I9; Tue, 08 Nov 2022 22:16:03 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1osbZL-00083M-4z for guix-patches@gnu.org; Tue, 08 Nov 2022 22:16:03 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1osbZK-0008OH-Rt for guix-patches@gnu.org; Tue, 08 Nov 2022 22:16:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1osbZK-0003j1-GS; Tue, 08 Nov 2022 22:16:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#59142] [PATCH 2/3] gnu: Add r-glmnetutils. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Wed, 09 Nov 2022 03:16:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 59142 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <59142@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 59142-submit@debbugs.gnu.org id=B59142.166796375914296 (code B ref 59142); Wed, 09 Nov 2022 03:16:02 +0000 Received: (at 59142) by debbugs.gnu.org; 9 Nov 2022 03:15:59 +0000 Received: from localhost ([127.0.0.1]:38559 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1osbZH-0003iQ-Ar for submit@debbugs.gnu.org; Tue, 08 Nov 2022 22:15:59 -0500 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:46291) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1osbZE-0003hs-0j for 59142@debbugs.gnu.org; Tue, 08 Nov 2022 22:15:57 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-transfer-encoding:content-type:content-type:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1667963749; x=1669778150; bh=o5jgSA22ODHvmb+sacIRZNpfd3S6mnjyj7e/XbP0qTE=; b=ChJlsdLwky4h r2FpFrmR5LI0GynnRQ3WFCK42wbq4CBgYSlxfqtEWKni6LH+gYVIdKu6Rpdifonm iw5YT/UmGvH1chKjI7iogPOGA/aF7+Hh9rXEOqCSbUKj0LdIH3EUa+yD0hxoJOQT o9RcqydGWOpd0ibTlctit+Ky6ydE4vM= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id ADF343002F6 for <59142@debbugs.gnu.org>; Wed, 9 Nov 2022 04:15:49 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.13; Wed, 9 Nov 2022 04:15:47 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Wed, 9 Nov 2022 04:13:30 +0100 Message-ID: <20221109031331.12487-2-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20221109031331.12487-1-madalinionel.patrascu@mdc-berlin.de> References: <20221109031331.12487-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27252.004 X-TM-AS-Result: No-10--3.513200-5.000000 X-TMASE-MatchedRID: /+von0vPuFH/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkELq6 6d0Fv4eURRa406V/YwyBUGewL2YXt8Z8zsjIitoJnVTWWiNp+v9lRzZAkKRGDaY5ZGw7wyeHY87 NwWBxSvgXwJ4mjy7A0C1h1eUc+p680N7DjAdxZNTnzlXMYw4XMDzvSj1BF/M7C24oEZ6SpSk6XE E7Yhw4FidD+Qh6/9mj8pj38OI8mS+zdLSFcIdv2EQsFI7I8I3USbKhk5JQoIWSw5kZBi2Q6CWZs K6jmTWf5WnGuUSFr/kKveF4MHtyRt8iatREjfpDE8nb9DwdQ4C2jbSab1pg0UjxFpwn53SOfhj5 CZkmSyI= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.513200-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27252.004 X-TM-SNTS-SMTP: E3C45FC3FE3ADB4AA82898D2EFEC06794686D213FEE35A09570F5A1DD642C53E2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-glmnetutils): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 7f5ad1faf3..71843a8cb6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4153,6 +4153,32 @@ (define-public r-glue Docstrings (PEP-0257) and Julia's Triple-Quoted String Literals.") (license license:expat))) +(define-public r-glmnetutils + (package + (name "r-glmnetutils") + (version "1.1.8") + (source (origin + (method url-fetch) + (uri (cran-uri "glmnetUtils" version)) + (sha256 + (base32 + "1k8ivzjgpkm2a948qxx3wmkhlppbk31qc76spv2pscmp24x0lxyn")))) + (properties `((upstream-name . "glmnetUtils"))) + (build-system r-build-system) + (propagated-inputs + (list r-glmnet + r-matrix)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/hongooi73/glmnetUtils") + (synopsis + "Streamline the process of fitting elastic net models with glmnet") + (description + "This package provides a collection of tools to streamline the process of +fitting elastic net models with @code{glmnet}. In addition to providing a formula +interface, it also features a function @code{cva.glmnet} to do crossvalidation +for both α and λ, as well as some utility functions.") + (license license:gpl2))) + (define-public r-paletteer (package (name "r-paletteer") From patchwork Wed Nov 9 03:13:31 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 44403 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 07EC627BBEB; Wed, 9 Nov 2022 03:16:34 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS, URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 5052B27BBE9 for ; Wed, 9 Nov 2022 03:16:33 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1osbZL-00083b-Ub; Tue, 08 Nov 2022 22:16:03 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1osbZK-000833-Oz for guix-patches@gnu.org; Tue, 08 Nov 2022 22:16:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1osbZK-0008O3-Gl for guix-patches@gnu.org; Tue, 08 Nov 2022 22:16:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1osbZK-0003is-1i; Tue, 08 Nov 2022 22:16:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#59142] [PATCH 3/3] gnu: Add r-pando. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Wed, 09 Nov 2022 03:16:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 59142 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <59142@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 59142-submit@debbugs.gnu.org id=B59142.166796375914290 (code B ref 59142); Wed, 09 Nov 2022 03:16:02 +0000 Received: (at 59142) by debbugs.gnu.org; 9 Nov 2022 03:15:59 +0000 Received: from localhost ([127.0.0.1]:38557 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1osbZG-0003iJ-Qq for submit@debbugs.gnu.org; Tue, 08 Nov 2022 22:15:59 -0500 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:55629) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1osbZE-0003ht-Dr for 59142@debbugs.gnu.org; Tue, 08 Nov 2022 22:15:57 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1667963750; x=1669778151; bh=anjMT2uJS+WEFHudVpJj+BKpuH9h5uRYfz28tCYjNMw=; b=OxylJ51RqnZV m+rZ4UDb3rWYHoJCsQRa8/iHvSi1Zc0cgnbNxvIYhUDjuxnOY3yOESHnS3rBCZ1y pUtaWFzqmDYMA1wprM9rtQcgsOPtrTMAV8Vh0CX62F7SYLLmu7/qqNMEuQ+asTbx yKCoyF8d6z4FTDH6osXA89W+fPkXov8= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 6390E3002F9 for <59142@debbugs.gnu.org>; Wed, 9 Nov 2022 04:15:50 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.13; Wed, 9 Nov 2022 04:15:47 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Wed, 9 Nov 2022 04:13:31 +0100 Message-ID: <20221109031331.12487-3-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20221109031331.12487-1-madalinionel.patrascu@mdc-berlin.de> References: <20221109031331.12487-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27252.004 X-TM-AS-Result: No-10--2.888400-5.000000 X-TMASE-MatchedRID: 54gb2yeIOXR6fjezFKxXHArcxrzwsv5uwTlc9CcHMZerwqxtE531VIPc XuILVCbaRRa406V/YwyBUGewL2YXt10ieHN50/kHxi///JpaHQPF0kjYVlocoaY5ZGw7wyeHJ41 MkTChJC8DLGsLUNXmfO8EXzJfARL10N7DjAdxZNTi8zVgXoAltsIJ+4gwXrEtwrbXMGDYqV8Nst CXmf87HDoiWn+wq+fRoqhRhbf+cgE03S4XUEEM6phzJoZhXcxtnGYcDbn9w8JvQYMNbeLziMwI0 w+ZP4PnohN7csIcnoZ5tgTrUUdLhChCDgyssE8uo3yYJV8x0OrMUVc0s17dsX/q4TD2v7K1 X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.888400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27252.004 X-TM-SNTS-SMTP: 24AB6D0D09AC873044737685804912D8C8F0E2124D4E3172EF5FA26B29974BC22002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-pando): New variable. --- gnu/packages/bioinformatics.scm | 50 +++++++++++++++++++++++++++++++++ 1 file changed, 50 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 47f5574eeb..87c93bab4d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7600,6 +7600,56 @@ (define-public r-chromunity Pore-C concatemers.") (license license:gpl3)))) +(define-public r-pando + (package + (name "r-pando") + (version "1.0.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/quadbiolab/Pando") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0c83anzdrbvg47p9xns2bxpjlx5z328can3jmzilw6rygwp7hyii")))) + (properties `((upstream-name . "Pando"))) + (build-system r-build-system) + (propagated-inputs + (list r-bayestestr + r-brms + r-foreach + r-genomicranges + r-ggplot2 + r-ggpointdensity + r-ggraph + r-glmnetutils + r-iranges + r-irlba + r-matrix + r-motifmatchr + r-pals + r-patchwork + r-seurat + r-signac + r-sparsematrixstats + r-tfbstools + r-tidygraph + r-tidyverse + r-uwot + r-xgboost)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/quadbiolab/Pando") + (synopsis + "Inferring regulomes from multi-modal single-cell genomics data") + (description + "@code{Pando} leverages multi-modal single-cell measurements to infer gene +regulatory networks using a flexible linear model-based framework. By modeling +the relationship between TF-binding site pairs with the expression of target +genes, @code{Pando} simultaneously infers gene modules and sets of regulatory +regions for each transcription factor.") + (license license:expat))) + (define-public r-presto (let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad") (revision "0"))