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[bug#58523] gnu: Add r-macrophage.

Message ID 20221014172728.3982-1-madalinionel.patrascu@mdc-berlin.de
State Accepted
Headers show
Series [bug#58523] gnu: Add r-macrophage. | expand

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Commit Message

Mădălin Ionel Patrașcu Oct. 14, 2022, 5:27 p.m. UTC 
X-Debbugs-Cc: rekado@elephly.net

* gnu/packages/bioconductor.scm (r-macrophage): New variable.
---
 gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)


base-commit: 10d429f2fce321d8285684503094694ec3979865

Comments

Ricardo Wurmus Oct. 15, 2022, 9:23 p.m. UTC | #1 
Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:

> X-Debbugs-Cc: rekado@elephly.net
>
> * gnu/packages/bioconductor.scm (r-macrophage): New variable.

Applied, thanks!
diff mbox series

Patch

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ecb60f2e24..3692bb94af 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1384,6 +1384,29 @@  (define-public r-genomationdata
 downloaded from Encode.")
     (license license:gpl3+)))
 
+(define-public r-macrophage
+  (package
+    (name "r-macrophage")
+    (version "1.12.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "macrophage" version
+                                     'experiment))
+              (sha256
+               (base32
+                "0ml8v92w021fmzsn4yl90ap3l4l3b9c1pk8pzsrm122p82wzlyms"))))
+    (properties `((upstream-name . "macrophage")))
+    (build-system r-build-system)
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/macrophage")
+    (synopsis "Human macrophage immune response data")
+    (description
+     "This package provides the output of running @code{Salmon} on a set of 24
+RNA-seq samples from Alasoo, et al. \"Shared genetic effects on chromatin and
+gene expression indicate a role for enhancer priming in immune response\", published
+in Nature Genetics, January 2018.")
+    (license license:gpl2+)))
+
 (define-public r-msdata
   (package
     (name "r-msdata")