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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Fri, 14 Oct 2022 17:28:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 58523 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 58523@debbugs.gnu.org Cc: rekado@elephly.net X-Debbugs-Original-To: X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by submit@debbugs.gnu.org id=B.16657684727502 (code B ref -1); Fri, 14 Oct 2022 17:28:02 +0000 Received: (at submit) by debbugs.gnu.org; 14 Oct 2022 17:27:52 +0000 Received: from localhost ([127.0.0.1]:38512 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ojOTP-0001wv-NX for submit@debbugs.gnu.org; Fri, 14 Oct 2022 13:27:52 -0400 Received: from lists.gnu.org ([209.51.188.17]:44256) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ojOTO-0001wo-1J for submit@debbugs.gnu.org; Fri, 14 Oct 2022 13:27:50 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:38150) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1ojOTN-0000tp-Q9 for guix-patches@gnu.org; Fri, 14 Oct 2022 13:27:49 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:48729) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1ojOTK-0006gi-V3 for guix-patches@gnu.org; Fri, 14 Oct 2022 13:27:48 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1665768459; x=1667582860; bh=ZQMO4tuUUIz3JlU KXfBPlgm/LwvY7rvDUCNF5Jrsk10=; b=KyBpOOhb7Jiic24ArZ/MxsO+LaS3857 GP9enAsl7kUxBkk1Jgntsjgsl//IgrvwNVMS2ilmvs2WfoCjq3Y55tMq8upeyuWf b0yRtt1c/JcFqBbByE+PC7hIMTIOyO62lJcmMOh5b14nKjbQ6qWxLusxfKp73pTA e/YTrd2Qd/10= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 04BDD1603E3 for ; Fri, 14 Oct 2022 19:27:38 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.12; Fri, 14 Oct 2022 19:27:38 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Fri, 14 Oct 2022 19:27:28 +0200 Message-ID: <20221014172728.3982-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.37.3 MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27202.001 X-TM-AS-Result: No-10--7.995100-5.000000 X-TMASE-MatchedRID: a3KJLn6RIiKaVzGETDUtnArcxrzwsv5uwTlc9CcHMZerwqxtE531VNnf JrUSEbFDnl0XDEnyb7ruNT8xdcEnQwE+dA3RWUSvwLYk+NSxc5r4qCLIu0mtII8At8YCVVsfqbs +nJ/tFJER2mYLPjXkrmZw9r+P6lFy3SWdjqTh/wrGL//8mlodA27/cF+aeNZMU72YOAMDJjieAi CmPx4NwBnUJ0Ek6yhjxEHRux+uk8gVPU8Gz4xVjfJT+hf62k2Yw16aQE3Vo3KQDSPaIxCrZHRJq eoBGlaoLhGCx+H8KTXmgf/twp+vCOulxyHOcPoH X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--7.995100-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27202.001 X-TM-SNTS-SMTP: DA85BDBEC03E439E0385DAA56B1469839738E3205E97C5FB8BC9F5C7190C663D2002:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches X-Debbugs-Cc: rekado@elephly.net * gnu/packages/bioconductor.scm (r-macrophage): New variable. --- gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) base-commit: 10d429f2fce321d8285684503094694ec3979865 diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ecb60f2e24..3692bb94af 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1384,6 +1384,29 @@ (define-public r-genomationdata downloaded from Encode.") (license license:gpl3+))) +(define-public r-macrophage + (package + (name "r-macrophage") + (version "1.12.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "macrophage" version + 'experiment)) + (sha256 + (base32 + "0ml8v92w021fmzsn4yl90ap3l4l3b9c1pk8pzsrm122p82wzlyms")))) + (properties `((upstream-name . "macrophage"))) + (build-system r-build-system) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/macrophage") + (synopsis "Human macrophage immune response data") + (description + "This package provides the output of running @code{Salmon} on a set of 24 +RNA-seq samples from Alasoo, et al. \"Shared genetic effects on chromatin and +gene expression indicate a role for enhancer priming in immune response\", published +in Nature Genetics, January 2018.") + (license license:gpl2+))) + (define-public r-msdata (package (name "r-msdata")