@@ -4349,6 +4349,43 @@ (define-public r-samr
;; Any version of the LGPL
(license license:lgpl3+)))
+(define-public r-scannotatr
+ (package
+ (name "r-scannotatr")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "scAnnotatR" version))
+ (sha256
+ (base32 "08jq04ckjw8a5y753almc5bl8vnn4j6qp2zb7bb9w3ql3ddy7b21"))))
+ (properties `((upstream-name . "scAnnotatR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-annotationhub
+ r-ape
+ r-caret
+ r-data-tree
+ r-dplyr
+ r-e1071
+ r-ggplot2
+ r-kernlab
+ r-proc
+ r-rocr
+ r-seurat
+ r-singlecellexperiment
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/grisslab/scAnnotatR")
+ (synopsis "Pretrained models for prediction on single cell RNA-sequencing data")
+ (description
+ "This package comprises a set of pretrained machine learning models to
+predict basic immune cell types. This enables to quickly get a first
+annotation of the cell types present in the dataset without requiring prior
+knowledge. The package also allows to train using own models to predict new
+cell types based on specific research needs.")
+ (license license:expat)))
+
(define-public r-scdblfinder
(package
(name "r-scdblfinder")