@@ -22,10 +22,17 @@
#:use-module (guix git-download)
#:use-module (guix packages)
#:use-module (gnu packages)
+ #:use-module (gnu packages bioinformatics)
#:use-module (gnu packages check)
+ #:use-module (gnu packages databases)
+ #:use-module (gnu packages freedesktop)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-check)
+ #:use-module (gnu packages python-crypto)
#:use-module (gnu packages python-science)
- #:use-module (gnu packages python-xyz))
+ #:use-module (gnu packages python-xyz)
+ #:use-module (gnu packages qt)
+ #:use-module (gnu packages sphinx))
(define-public python-spyder-kernels
(package
@@ -123,3 +130,104 @@ code inside Spyder.")
Protocol (LSP) on Python, such as document symbol searching and others.")
(license license:expat)))
+(define-public spyder
+ (package
+ (name "spyder")
+ (version "5.0.1")
+ (source
+ (origin
+ ;; There are no tests in the PyPI tarball.
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/spyder-ide/spyder/")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0pn6kl0jw9zcv8lbk1v90rlrvb3mvjvx6g0x55vv5fydn61nadc5"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:tests? #f ;TODO: Enable tests
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'preparations
+ (lambda _
+ ;; Delete bundled dependencies since we have all of them.
+ (delete-file-recursively "external-deps")
+
+ ;; Relax some dependency versions.
+ (substitute* "setup.py" (("jedi==0.17.2") "jedi"))
+ (substitute* "setup.py" (("parso==0.7.0") "parso"))
+ (substitute* "setup.py" (("qdarkstyle==3.0.2") "qdarkstyle"))
+ (substitute* "setup.py" (("'pyqt5<5.13',") ""))
+ (substitute* "setup.py" (("'pyqtwebengine<5.13',") ""))
+ #t))
+ ;; Ensure that QtWebEngineProcess is found by the executable.
+ (add-after 'wrap 'wrap-qt-process-path
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (bin (string-append out "/bin/spyder"))
+ (qt-process-path (string-append
+ (assoc-ref inputs "qtwebengine")
+ "/lib/qt5/libexec/QtWebEngineProcess")))
+ (wrap-program bin
+ `("QTWEBENGINEPROCESS_PATH" = (,qt-process-path)))
+ #t)))
+ ;; Ensure that icons are found at runtime.
+ (add-after 'install 'wrap-executable
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out")))
+ (wrap-program (string-append out "/bin/spyder")
+ `("QT_PLUGIN_PATH" prefix
+ ,(list (string-append (assoc-ref inputs "qtsvg")
+ "/lib/qt5/plugins/")))))
+ #t)))))
+ (inputs
+ `(("python-atomicwrites" ,python-atomicwrites)
+ ("python-chardet" ,python-chardet)
+ ("python-cloudpickle" ,python-cloudpickle)
+ ("python-cookiecutter" ,python-cookiecutter)
+ ("python-diff-match-patch"
+ ,python-diff-match-patch)
+ ("python-intervaltree" ,python-intervaltree)
+ ("python-ipython" ,python-ipython)
+ ("python-jedi" ,python-jedi)
+ ("python-jsonschema" ,python-jsonschema)
+ ("python-keyring" ,python-keyring)
+ ("python-language-server"
+ ,python-language-server)
+ ("python-nbconvert" ,python-nbconvert)
+ ("python-numpydoc" ,python-numpydoc)
+ ("python-parso" ,python-parso)
+ ("python-pexpect" ,python-pexpect)
+ ("python-pickleshare" ,python-pickleshare)
+ ("python-psutil" ,python-psutil)
+ ("python-pygments" ,python-pygments)
+ ("python-pylint" ,python-pylint)
+ ("python-pyls-black" ,python-pyls-black)
+ ("python-pyls-spyder" ,python-pyls-spyder)
+ ("python-pyqt" ,python-pyqt)
+ ("python-pyqtwebengine" ,python-pyqtwebengine)
+ ("python-pyxdg" ,python-pyxdg)
+ ("python-pyzmq" ,python-pyzmq)
+ ("python-qdarkstyle" ,python-qdarkstyle)
+ ("python-qstylizer" ,python-qstylizer)
+ ("python-qtawesome" ,python-qtawesome)
+ ("python-qtconsole" ,python-qtconsole)
+ ("python-qtpy" ,python-qtpy)
+ ("python-sphinx" ,python-sphinx)
+ ("python-spyder-kernels" ,python-spyder-kernels)
+ ("python-textdistance" ,python-textdistance)
+ ("python-three-merge" ,python-three-merge)
+ ("python-watchdog" ,python-watchdog)
+ ("qtsvg" ,qtsvg)
+ ("qtwebengine" ,qtwebengine)))
+ (home-page "https://www.spyder-ide.org/")
+ (synopsis "Scientific Python Development Environment")
+ (description
+ "Spyder is a scientific environment written in Python, for Python, and
+designed by and for scientists, engineers and data analysts. It offers a
+unique combination of the advanced editing, analysis, debugging, and profiling
+functionality of a comprehensive development tool with the data exploration,
+interactive execution, deep inspection, and visualization capabilities of a
+scientific package.")
+ (license license:expat)))