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[bug#46955,2/2] gnu: python-cooler: Update to 0.8.10.

Message ID 20210306005703.25479-2-madalinionel.patrascu@mdc-berlin.de
State Accepted
Headers show
Series [bug#46955,1/2] gnu: Add python-sparse. | expand

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Commit Message

Mădălin Ionel Patrașcu March 6, 2021, 12:57 a.m. UTC 
* gnu/packages/bioinformatics.scm (python-cooler): Update to 0.8.10/
---
 gnu/packages/bioinformatics.scm | 21 ++++++++++++---------
 1 file changed, 12 insertions(+), 9 deletions(-)

Comments

Ricardo Wurmus April 1, 2021, 3:09 p.m. UTC | #1 
Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:

> * gnu/packages/bioinformatics.scm (python-cooler): Update to 0.8.10/

There’s a typo (“/” instead of “.”) and the changes to the
propagated-inputs, native-inputs, and home-page fields are not listed.

Could you please add them to the commit message?

Thanks!
diff mbox series

Patch

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6d21e14360..bc31d50e54 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13636,35 +13636,38 @@  fasta subsequences.")
 (define-public python-cooler
   (package
     (name "python-cooler")
-    (version "0.8.7")
+    (version "0.8.10")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "cooler" version))
        (sha256
         (base32
-         "01g6gqix9ba27sappz6nfyiwabzrlf8i5fn8kwcz8ra356cq9crp"))))
+          "1hi9anwz8b9p9wigzc5hypnwm6a4ikvlv69ixy3ki8939ngb1sj3"))))
     (build-system python-build-system)
     (propagated-inputs
      `(("python-asciitree" ,python-asciitree)
-       ("python-biopython" ,python-biopython)
        ("python-click" ,python-click)
        ("python-cytoolz" ,python-cytoolz)
-       ("python-dask" ,python-dask)
        ("python-h5py" ,python-h5py)
        ("python-multiprocess" ,python-multiprocess)
        ("python-numpy" ,python-numpy)
        ("python-pandas" ,python-pandas)
        ("python-pyfaidx" ,python-pyfaidx)
        ("python-pypairix" ,python-pypairix)
-       ("python-pysam" ,python-pysam)
        ("python-pyyaml" ,python-pyyaml)
        ("python-scipy" ,python-scipy)
-       ("python-simplejson" ,python-simplejson)))
+       ("python-simplejson" ,python-simplejson)
+       ("python-six" ,python-six)))
     (native-inputs
-     `(("python-mock" ,python-mock)
-       ("python-pytest" ,python-pytest)))
-    (home-page "https://github.com/mirnylab/cooler")
+     `(("python-codecov" ,python-codecov)
+       ("python-dask" ,python-dask)     ;;unittest.runner.TextTestResult
+       ("python-mock" ,python-mock)
+       ("python-pytest" ,python-pytest)
+       ("python-pytest-cov" ,python-pytest-cov)
+       ("python-pytest-flake8" ,python-pytest-flake8)
+       ("python-sparse" ,python-sparse))) ;;unittest.runner.TextTestResult
+    (home-page "https://github.com/open2c/cooler")
     (synopsis "Sparse binary format for genomic interaction matrices")
     (description
      "Cooler is a support library for a sparse, compressed, binary persistent