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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 06 Mar 2021 00:58:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 46955 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: To: <46955@debbugs.gnu.org> Cc: rekado@elephly.net, =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmE=?= =?utf-8?b?yJljdQ==?= Received: via spool by 46955-submit@debbugs.gnu.org id=B46955.16149922606076 (code B ref 46955); Sat, 06 Mar 2021 00:58:01 +0000 Received: (at 46955) by debbugs.gnu.org; 6 Mar 2021 00:57:40 +0000 Received: from localhost ([127.0.0.1]:35743 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lILGG-0001Zr-Gi for submit@debbugs.gnu.org; Fri, 05 Mar 2021 19:57:40 -0500 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:51133) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lILGE-0001ZX-Cv for 46955@debbugs.gnu.org; Fri, 05 Mar 2021 19:57:39 -0500 Received: from localhost (localhost [127.0.0.1]) by c2062.mx.srv.dfn.de (Postfix) with ESMTP id 0CCD2300119; Sat, 6 Mar 2021 01:57:32 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received:received:received; s=mdc; t= 1614992251; x=1616806652; bh=hDB9R2F95y0mv2J2r96bJzlFd06PhbuiU5P figQ3B70=; b=Ai21/ZrZ7pG361k+9np/7+VeLMait5og+JIDRCEs4Yh7qC5Jh71 bIzEdms+VSx69T+evjR39kBxfM1jFrbAzXJ3GEEEdb81BaiitHA4joLtd5P4iPcv yIEeKwNqu2450Qf9ieRL2O16jXoRU4JOL3SM1AZdy6vPuWatApNbJfYM= Received: from c2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-erl.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id nLQ27qW1Vkqr; Sat, 6 Mar 2021 01:57:31 +0100 (CET) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS; Sat, 6 Mar 2021 01:57:31 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2176.2; Sat, 6 Mar 2021 01:57:31 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Sat, 6 Mar 2021 01:57:03 +0100 Message-ID: <20210306005703.25479-2-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.30.1 In-Reply-To: <20210306005703.25479-1-madalinionel.patrascu@mdc-berlin.de> References: <20210306005703.25479-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3080-8.6.1012-26012.003 X-TM-AS-Result: No-10--1.901600-8.000000 X-TMASE-MatchedRID: IajoWEPWtmK6/eEqqZaZmj8Ckw9b/GFeTJDl9FKHbrn7fZJfDdCIXISC l3uvYUiSC6+Zjvylmgt6n3hIvN5dLetbninbl/qrvr7oQh2H9etKhpFNiC3g3hHfiujuTbedu95 6BjcJKyQZDJ72K11ChJNb5HQLbebH7Tqch0zEtNGL6q5RsNhv5PLfqX4QTDm8xaBBt5x+Tc6YDT IhMw3OOX0tCKdnhB589yM15V5aWpj6C0ePs7A07ba607moR85R7if6eFicpJ+/L/l0xOrOcSPbi /Gx1mOfBm/2yD38/KaEQxghebWIdCJm20qIrbV/czCm0bU8FunF7/pJf0EW2mswzhJnyVc0b8fs uEgqM7bRtaXwfRDZE7Qwvjsqb5f0Rg4BBcJumqA+kK598Yf3Mg== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--1.901600-8.000000 X-TMASE-Version: SMEX-14.0.0.3080-8.6.1012-26012.003 X-TM-SNTS-SMTP: 17748E8121FA99A6118D2D72552E4E3E06BF5E29D72A3B461C050DD834DB8A102000:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (python-cooler): Update to 0.8.10/ --- gnu/packages/bioinformatics.scm | 21 ++++++++++++--------- 1 file changed, 12 insertions(+), 9 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6d21e14360..bc31d50e54 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13636,35 +13636,38 @@ fasta subsequences.") (define-public python-cooler (package (name "python-cooler") - (version "0.8.7") + (version "0.8.10") (source (origin (method url-fetch) (uri (pypi-uri "cooler" version)) (sha256 (base32 - "01g6gqix9ba27sappz6nfyiwabzrlf8i5fn8kwcz8ra356cq9crp")))) + "1hi9anwz8b9p9wigzc5hypnwm6a4ikvlv69ixy3ki8939ngb1sj3")))) (build-system python-build-system) (propagated-inputs `(("python-asciitree" ,python-asciitree) - ("python-biopython" ,python-biopython) ("python-click" ,python-click) ("python-cytoolz" ,python-cytoolz) - ("python-dask" ,python-dask) ("python-h5py" ,python-h5py) ("python-multiprocess" ,python-multiprocess) ("python-numpy" ,python-numpy) ("python-pandas" ,python-pandas) ("python-pyfaidx" ,python-pyfaidx) ("python-pypairix" ,python-pypairix) - ("python-pysam" ,python-pysam) ("python-pyyaml" ,python-pyyaml) ("python-scipy" ,python-scipy) - ("python-simplejson" ,python-simplejson))) + ("python-simplejson" ,python-simplejson) + ("python-six" ,python-six))) (native-inputs - `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest))) - (home-page "https://github.com/mirnylab/cooler") + `(("python-codecov" ,python-codecov) + ("python-dask" ,python-dask) ;;unittest.runner.TextTestResult + ("python-mock" ,python-mock) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-flake8" ,python-pytest-flake8) + ("python-sparse" ,python-sparse))) ;;unittest.runner.TextTestResult + (home-page "https://github.com/open2c/cooler") (synopsis "Sparse binary format for genomic interaction matrices") (description "Cooler is a support library for a sparse, compressed, binary persistent