diff mbox series

[bug#43345,12/12] gnu: r-absfiltergsea: Move to (gnu packages cran).

Message ID 20200911180849.12582-11-zimon.toutoune@gmail.com
State Accepted
Headers show
Series Move some CRAN packages to (gnu packages cran). | expand

Commit Message

Simon Tournier Sept. 11, 2020, 6:08 p.m. UTC 
* gnu/packages/bioinformatics.scm (r-absfiltergsea): Move from here ...
* gnu/packages/cran.scm (r-absfiltergsea): ... to here.
---
 gnu/packages/bioinformatics.scm | 27 ---------------------------
 gnu/packages/cran.scm           | 27 +++++++++++++++++++++++++++
 2 files changed, 27 insertions(+), 27 deletions(-)
diff mbox series

Patch

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6381523009..ffa2618458 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14083,33 +14083,6 @@  downstream analysis.  Poretools operates directly on the native FAST5, a variant
 of the Hierarchical Data Format (HDF5) standard.")
       (license license:expat))))
 
-(define-public r-absfiltergsea
-  (package
-    (name "r-absfiltergsea")
-    (version "1.5.1")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (cran-uri "AbsFilterGSEA" version))
-       (sha256
-        (base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w"))))
-    (properties `((upstream-name . "AbsFilterGSEA")))
-    (build-system r-build-system)
-    (propagated-inputs
-     `(("r-biobase" ,r-biobase)
-       ("r-deseq" ,r-deseq)
-       ("r-limma" ,r-limma)
-       ("r-rcpp" ,r-rcpp)
-       ("r-rcpparmadillo" ,r-rcpparmadillo)))
-    (home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/")
-    (synopsis "Improved false positive control of gene-permuting with absolute filtering")
-    (description
-     "This package provides a function that performs gene-permuting of a gene-set
-enrichment analysis (GSEA) calculation with or without the absolute filtering.
-  Without filtering, users can perform (original) two-tailed or one-tailed
-absolute GSEA.")
-    (license license:gpl2)))
-
 (define-public jamm
   (package
     (name "jamm")
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 5b65d2a372..f9b6930f70 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -23926,3 +23926,30 @@  Extinction), \"QuaSSE\", \"GeoSSE\", and \"BiSSE-ness\" Other included methods
 include Markov models of discrete and continuous trait evolution and constant
 rate speciation and extinction.")
     (license license:gpl2+)))
+
+(define-public r-absfiltergsea
+  (package
+    (name "r-absfiltergsea")
+    (version "1.5.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "AbsFilterGSEA" version))
+       (sha256
+        (base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w"))))
+    (properties `((upstream-name . "AbsFilterGSEA")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biobase" ,r-biobase)
+       ("r-deseq" ,r-deseq)
+       ("r-limma" ,r-limma)
+       ("r-rcpp" ,r-rcpp)
+       ("r-rcpparmadillo" ,r-rcpparmadillo)))
+    (home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/")
+    (synopsis "Improved false positive control of gene-permuting with absolute filtering")
+    (description
+     "This package provides a function that performs gene-permuting of a gene-set
+enrichment analysis (GSEA) calculation with or without the absolute filtering.
+  Without filtering, users can perform (original) two-tailed or one-tailed
+absolute GSEA.")
+    (license license:gpl2)))