@@ -6260,3 +6260,53 @@ represent and interact with the gated cytometry data.")
"This package provides HDF5 storage based methods and functions for
manipulation of flow cytometry data.")
(license license:artistic2.0)))
+
+(define-public r-flowworkspace
+ (package
+ (name "r-flowworkspace")
+ (version "3.32.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "flowWorkspace" version))
+ (sha256
+ (base32
+ "1r1xxqzlp2x2gf79f37ckninnyjkxcb7xz7rffg2nadmapl5shvw"))))
+ (properties
+ `((upstream-name . "flowWorkspace")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bh" ,r-bh)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-cytolib" ,r-cytolib)
+ ("r-data-table" ,r-data-table)
+ ("r-digest" ,r-digest)
+ ("r-dplyr" ,r-dplyr)
+ ("r-flowcore" ,r-flowcore)
+ ("r-flowviz" ,r-flowviz)
+ ("r-graph" ,r-graph)
+ ("r-gridextra" ,r-gridextra)
+ ("r-lattice" ,r-lattice)
+ ("r-latticeextra" ,r-latticeextra)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-ncdfflow" ,r-ncdfflow)
+ ("r-rbgl" ,r-rbgl)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcppparallel" ,r-rcppparallel)
+ ("r-rgraphviz" ,r-rgraphviz)
+ ("r-rprotobuflib" ,r-rprotobuflib)
+ ("r-scales" ,r-scales)
+ ("r-stringr" ,r-stringr)))
+ (home-page
+ "https://bioconductor.org/packages/flowWorkspace")
+ (synopsis "Infrastructure for representing and interacting with cytometry data sets")
+ (description
+ "This package provides importer for basic workspaces from the proprietary
+software FlowJo into the BioConductor package flowCore. It is designed to
+facilitate comparison of automated gating methods against manual gating.
+Gating hierarchies, groups of samples, compensation, and transformation are
+performed so that the output matches the analysis from the proprietary
+software FlowJo.")
+ (license license:artistic2.0)))