mbox series

[bug#61148,0/5] Update vcflib

Message ID cover.1674997469.git.efraim@flashner.co.il
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Series Update vcflib | expand

Message

Efraim Flashner Jan. 29, 2023, 1:09 p.m. UTC 
vcflib has a new update out so it's time to update it and the dependant
packages. libvcfh doesn't seem to be used, perhaps Pjotr knows if it's
needed? I don't love '-DTABIX_FOUND=ON' in vcflib but it seems to work.
I'm also not sure that the simde headers are actually used.

I'd like to use more of the unbundled sources since it seems like a
waste to unbundle them and then just toss the sources back into the
build but they don't natively produce libraries so I'd rather not.
Perhaps it'd be better to just not unbundle them in the first place?

Efraim Flashner (5):
  gnu: intervaltree: Update to 0.1-1.aa59377.
  gnu: tabixpp: Update to 1.1.2.
  gnu: Add wfa2-lib.
  gnu: Add libvcfh.
  gnu: vcflib: Update to 1.0.6.

 gnu/packages/bioinformatics.scm | 217 ++++++++++++++++++++++++--------
 1 file changed, 166 insertions(+), 51 deletions(-)


base-commit: b9e6e31877cdb96cceba4d1ec6268f86b824dec4

Comments

Ricardo Wurmus Oct. 27, 2023, 12:38 p.m. UTC | #1 
These patches look good to me.

One note: you can use #$output directly instead of (assoc-ref outputs "out").