Message ID | 20210211210329.20176-1-madalinionel.patrascu@mdc-berlin.de |
---|---|
State | Accepted |
Headers | show |
Series | [bug#46448] gnu: bowtie1: Update to 1.3.0. | expand |
Context | Check | Description |
---|---|---|
cbaines/comparison | success | View comparision |
cbaines/git branch | success | View Git branch |
cbaines/applying patch | success | View Laminar job |
cbaines/issue | success | View issue |
Ricardo Wurmus <rekado@elephly.net> writes: > Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes: > >> * gnu/packages/bioinformatics.scm (bowtie1): Update to 1.3.0. > > Pushed with commit 160e4a95e7 with a slightly changed commit message to > mention the change to the “arguments” field. > > Thanks!
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index cbf08c5dd2..ab149d6aad 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1654,14 +1654,14 @@ gapped, local, and paired-end alignment modes.") (define-public bowtie1 (package (name "bowtie1") - (version "1.2.3") + (version "1.3.0") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/bowtie-bio/bowtie/" - version "/bowtie-src-x86_64.zip")) + version "/bowtie-" version "-src.zip")) (sha256 (base32 - "0vmiqdhc9dzyfy9sh6vgi7k9xy2hiw8g87vbamnc6cgpm179zsa4")) + "11dbihdnrizc6qhx9xsw77w3q5ssx642alaqzvhxx32ak9glvq04")) (modules '((guix build utils))) (snippet '(substitute* "Makefile" @@ -1672,7 +1672,7 @@ gapped, local, and paired-end alignment modes.") (arguments '(#:tests? #f ; no "check" target #:make-flags - (list "all" + (list "CC=gcc" "all" (string-append "prefix=" (assoc-ref %outputs "out"))) #:phases (modify-phases %standard-phases