From patchwork Sat Oct 23 14:30:08 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Julien Lepiller X-Patchwork-Id: 34020 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 4B3E827BBE3; Sat, 23 Oct 2021 15:31:18 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,T_DKIM_INVALID, URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 97BD027BBE1 for ; Sat, 23 Oct 2021 15:31:17 +0100 (BST) Received: from localhost ([::1]:34344 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1meI3I-0003Lz-K0 for patchwork@mira.cbaines.net; Sat, 23 Oct 2021 10:31:16 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:44436) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1meI34-0003KO-Da for guix-patches@gnu.org; Sat, 23 Oct 2021 10:31:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:53550) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1meI34-0007Rr-4e for guix-patches@gnu.org; Sat, 23 Oct 2021 10:31:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1meI33-0003jd-SO for guix-patches@gnu.org; Sat, 23 Oct 2021 10:31:01 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#51351] [PATCH] gnu: pplacer: Fix build. Resent-From: Julien Lepiller Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 23 Oct 2021 14:31:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 51351 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 51351@debbugs.gnu.org X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.163499944114327 (code B ref -1); Sat, 23 Oct 2021 14:31:01 +0000 Received: (at submit) by debbugs.gnu.org; 23 Oct 2021 14:30:41 +0000 Received: from localhost ([127.0.0.1]:36863 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1meI2j-0003j0-4t for submit@debbugs.gnu.org; Sat, 23 Oct 2021 10:30:41 -0400 Received: from lists.gnu.org ([209.51.188.17]:37624) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1meI2d-0003ip-Sv for submit@debbugs.gnu.org; Sat, 23 Oct 2021 10:30:39 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:44302) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1meI2d-00039T-EO for guix-patches@gnu.org; Sat, 23 Oct 2021 10:30:35 -0400 Received: from lepiller.eu ([2a00:5884:8208::1]:53842) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1meI2U-0006Cs-Bj for guix-patches@gnu.org; Sat, 23 Oct 2021 10:30:31 -0400 Received: from lepiller.eu (localhost [127.0.0.1]) by lepiller.eu (OpenSMTPD) with ESMTP id f24904d6 for ; Sat, 23 Oct 2021 14:30:14 +0000 (UTC) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed; d=lepiller.eu; h=date:from :to:subject:message-id:mime-version:content-type; s=dkim; bh=EaU BXCIw4a8B8hycTW4a/JOcq29AeoJ4qlsR6Rz/luI=; b=EG3UkuJsEATuYIU8LGz tobGvNt1H4moWzG+nU/MjchjHbS42cL+fpCG/ZRF0k1+0BLGjPkdj8vmAph/L2Ej Vc8fCCIWhOCC8EFhIYDzkChjoC2zAjLupd72Oe6YZlJFv293O6JUnyjToFENjgbA SO+6l4ko1DBHh6GAyKaQPsu1pPb0K94g0tet9g2V5qdamHHVOEYijPYegF8m2kh4 H+U9ALxdWWjqb2tjivMUjSrnfh7JF5/V8kEfD6eTqtG1wo59Gqc0Z9Yn/V+qqpLN L3adkWEARiVSA+hQwYyi+r44drcFCBDkt2Uql1JtmFApTiZ5Vdp2FUAYXqrEl8F2 vkg== Received: by lepiller.eu (OpenSMTPD) with ESMTPSA id b2afbb42 (TLSv1.3:AEAD-AES256-GCM-SHA384:256:NO) for ; Sat, 23 Oct 2021 14:30:14 +0000 (UTC) Date: Sat, 23 Oct 2021 16:30:08 +0200 From: Julien Lepiller Message-ID: <20211023163008.017145c3@tachikoma.lepiller.eu> X-Mailer: Claws Mail 3.18.0 (GTK+ 2.24.32; x86_64-pc-linux-gnu) MIME-Version: 1.0 Received-SPF: pass client-ip=2a00:5884:8208::1; envelope-from=julien@lepiller.eu; helo=lepiller.eu X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches Hi Guix! This patch series fixes pplacer. I noticed ocaml4.07-re was failing to build, and others also failed, so this series fixes them, and pplacer. From 9a5d8c50f30a25b5246d321d5331b72a88f587f9 Mon Sep 17 00:00:00 2001 Message-Id: <9a5d8c50f30a25b5246d321d5331b72a88f587f9.1634999221.git.julien@lepiller.eu> In-Reply-To: <5a85894ee405d2fbe909b61fb3817aa44d6a08df.1634999221.git.julien@lepiller.eu> References: <5a85894ee405d2fbe909b61fb3817aa44d6a08df.1634999221.git.julien@lepiller.eu> From: Julien Lepiller Date: Sat, 23 Oct 2021 15:30:04 +0200 Subject: [PATCH 6/6] gnu: pplacer: Fix build. * gnu/packages/bioinformatics.scm (pplacer): Add missing input. --- gnu/packages/bioinformatics.scm | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 63b391683c..41a2e52ac8 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -141,6 +141,7 @@ (define-module (gnu packages bioinformatics) #:use-module (gnu packages serialization) #:use-module (gnu packages shells) #:use-module (gnu packages sphinx) + #:use-module (gnu packages sqlite) #:use-module (gnu packages statistics) #:use-module (gnu packages swig) #:use-module (gnu packages tbb) @@ -13501,7 +13502,8 @@ (define-public pplacer ("ocaml-sqlite3" ,(package-with-ocaml4.07 ocaml-sqlite3)) ("ocaml-xmlm" ,(package-with-ocaml4.07 ocaml-xmlm)) ("ocaml-mcl" ,(package-with-ocaml4.07 ocaml-mcl)) - ("ocaml-gsl" ,ocaml4.07-gsl-1))) + ("ocaml-gsl" ,ocaml4.07-gsl-1) + ("sqlite:static" ,sqlite "static"))) (native-inputs `(("cddlib-src" ,(package-source cddlib)) ("ocamlbuild" ,(package-with-ocaml4.07 ocamlbuild)) -- 2.33.0