From patchwork Tue Oct 5 09:47:30 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Efraim Flashner X-Patchwork-Id: 33611 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 2E3C727BBE4; Tue, 5 Oct 2021 10:50:19 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.9 required=5.0 tests=BAYES_00,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id D974A27BBE1 for ; Tue, 5 Oct 2021 10:50:18 +0100 (BST) Received: from localhost ([::1]:58178 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1mXh5V-0001Jv-UU for patchwork@mira.cbaines.net; Tue, 05 Oct 2021 05:50:17 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:42772) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mXh5F-0001JR-VC for guix-patches@gnu.org; Tue, 05 Oct 2021 05:50:01 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:55804) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1mXh5F-0001yY-Np for guix-patches@gnu.org; Tue, 05 Oct 2021 05:50:01 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1mXh5F-0008FI-LN for guix-patches@gnu.org; Tue, 05 Oct 2021 05:50:01 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#51028] [PATCH 1/7] gnu: Add julia-latexstrings. Resent-From: Efraim Flashner Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 05 Oct 2021 09:50:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 51028 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 51028@debbugs.gnu.org Cc: Efraim Flashner Received: via spool by 51028-submit@debbugs.gnu.org id=B51028.163342736631636 (code B ref 51028); Tue, 05 Oct 2021 09:50:01 +0000 Received: (at 51028) by debbugs.gnu.org; 5 Oct 2021 09:49:26 +0000 Received: from localhost ([127.0.0.1]:39114 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mXh4g-0008EC-67 for submit@debbugs.gnu.org; Tue, 05 Oct 2021 05:49:26 -0400 Received: from flashner.co.il ([178.62.234.194]:36498) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mXh4e-0008Dz-OH for 51028@debbugs.gnu.org; Tue, 05 Oct 2021 05:49:25 -0400 Received: from localhost (unknown [141.226.169.107]) by flashner.co.il (Postfix) with ESMTPSA id AC2D240085; Tue, 5 Oct 2021 09:49:18 +0000 (UTC) From: Efraim Flashner Date: Tue, 5 Oct 2021 12:47:30 +0300 Message-Id: X-Mailer: git-send-email 2.33.0 In-Reply-To: References: MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/julia-xyz.scm (julia-latexstrings): New variable. --- gnu/packages/julia-xyz.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm index 492fdd9175..2238acf103 100644 --- a/gnu/packages/julia-xyz.scm +++ b/gnu/packages/julia-xyz.scm @@ -2407,6 +2407,28 @@ (define-public julia-json3 focus on speed and slick struct mapping.") (license license:expat))) +(define-public julia-latexstrings + (package + (name "julia-latexstrings") + (version "1.2.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/stevengj/LaTeXStrings.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "117z27krcf8fydgp6mb0pgn75r4gng9qs7v90qb4bqzsry3faadp")))) + (build-system julia-build-system) + (native-inputs + `(("julia-documenter" ,julia-documenter))) + (home-page "https://github.com/stevengj/LaTeXStrings.jl") + (synopsis "Input and display of LaTeX equation strings") + (description "This is a small package to make it easier to type LaTeX +equations in string literals in the Julia language.") + (license license:expat))) + (define-public julia-lazyarrays (package (name "julia-lazyarrays") From patchwork Tue Oct 5 09:47:31 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Efraim Flashner X-Patchwork-Id: 33612 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 7993827BBE1; Tue, 5 Oct 2021 10:50:19 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.9 required=5.0 tests=BAYES_00,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id F017C27BBE3 for ; Tue, 5 Oct 2021 10:50:18 +0100 (BST) Received: from localhost ([::1]:58180 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1mXh5V-0001Jw-VS for patchwork@mira.cbaines.net; Tue, 05 Oct 2021 05:50:18 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:42774) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mXh5G-0001JZ-Cw for guix-patches@gnu.org; Tue, 05 Oct 2021 05:50:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:55805) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1mXh5G-0001yn-5W for guix-patches@gnu.org; Tue, 05 Oct 2021 05:50:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1mXh5G-0008FQ-3J for guix-patches@gnu.org; Tue, 05 Oct 2021 05:50:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#51028] [PATCH 2/7] gnu: Add julia-pyplot. Resent-From: Efraim Flashner Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 05 Oct 2021 09:50:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 51028 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 51028@debbugs.gnu.org Cc: Efraim Flashner Received: via spool by 51028-submit@debbugs.gnu.org id=B51028.163342739831684 (code B ref 51028); Tue, 05 Oct 2021 09:50:02 +0000 Received: (at 51028) by debbugs.gnu.org; 5 Oct 2021 09:49:58 +0000 Received: from localhost ([127.0.0.1]:39117 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mXh5C-0008Ex-EC for submit@debbugs.gnu.org; Tue, 05 Oct 2021 05:49:58 -0400 Received: from flashner.co.il ([178.62.234.194]:36506) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mXh5B-0008El-6W for 51028@debbugs.gnu.org; Tue, 05 Oct 2021 05:49:57 -0400 Received: from localhost (unknown [141.226.169.107]) by flashner.co.il (Postfix) with ESMTPSA id 6150940085; Tue, 5 Oct 2021 09:49:51 +0000 (UTC) From: Efraim Flashner Date: Tue, 5 Oct 2021 12:47:31 +0300 Message-Id: X-Mailer: git-send-email 2.33.0 In-Reply-To: References: MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/julia-xyz.scm (julia-pyplot): New variable. --- gnu/packages/julia-xyz.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm index 2238acf103..5925ca2417 100644 --- a/gnu/packages/julia-xyz.scm +++ b/gnu/packages/julia-xyz.scm @@ -3280,6 +3280,35 @@ (define-public julia-pycall share large data structures between Julia and Python without copying them.") (license license:expat))) +(define-public julia-pyplot + (package + (name "julia-pyplot") + (version "2.10.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaPy/PyPlot.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "007zs0imfgs69f30pp2a3rc93kl0qiq7qjx6ig35z4wzkmps4skd")))) + (build-system julia-build-system) + (propagated-inputs + `(("julia-colors" ,julia-colors) + ("julia-latexstrings" ,julia-latexstrings) + ("julia-pycall" ,julia-pycall) + ("julia-versionparsing" ,julia-versionparsing) + ;; python-matplotlib is expected to be available at runtime. + ("python-matplotlib" ,python-matplotlib))) + (home-page "https://github.com/JuliaPy/PyPlot.jl") + (synopsis "Plotting for Julia based on matplotlib.pyplot") + (description "This module provides a Julia interface to the Matplotlib +plotting library from Python, and specifically to the @code{matplotlib.pyplot} +module. PyPlot uses the Julia PyCall package to call Matplotlib directly from +Julia with little or no overhead (arrays are passed without making a copy).") + (license license:expat))) + (define-public julia-quadgk (package (name "julia-quadgk") From patchwork Tue Oct 5 09:47:32 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Efraim Flashner X-Patchwork-Id: 33613 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id C16C427BBE3; Tue, 5 Oct 2021 10:51:36 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.9 required=5.0 tests=BAYES_00,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 8438F27BBE1 for ; Tue, 5 Oct 2021 10:51:36 +0100 (BST) Received: from localhost ([::1]:59406 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1mXh6l-0002Fz-Jo for patchwork@mira.cbaines.net; Tue, 05 Oct 2021 05:51:35 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:43018) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mXh6E-0002Dv-AM for guix-patches@gnu.org; Tue, 05 Oct 2021 05:51:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:55809) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1mXh6E-0003bv-3I for guix-patches@gnu.org; Tue, 05 Oct 2021 05:51:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1mXh6E-0008HF-2O for guix-patches@gnu.org; Tue, 05 Oct 2021 05:51:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#51028] [PATCH 3/7] gnu: Add julia-dataframes. Resent-From: Efraim Flashner Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 05 Oct 2021 09:51:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 51028 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 51028@debbugs.gnu.org Cc: Efraim Flashner Received: via spool by 51028-submit@debbugs.gnu.org id=B51028.163342743231773 (code B ref 51028); Tue, 05 Oct 2021 09:51:02 +0000 Received: (at 51028) by debbugs.gnu.org; 5 Oct 2021 09:50:32 +0000 Received: from localhost ([127.0.0.1]:39122 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mXh5j-0008GO-NP for submit@debbugs.gnu.org; Tue, 05 Oct 2021 05:50:31 -0400 Received: from flashner.co.il ([178.62.234.194]:36510) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mXh5h-0008GC-VJ for 51028@debbugs.gnu.org; Tue, 05 Oct 2021 05:50:30 -0400 Received: from localhost (unknown [141.226.169.107]) by flashner.co.il (Postfix) with ESMTPSA id 13AD240417; Tue, 5 Oct 2021 09:50:23 +0000 (UTC) From: Efraim Flashner Date: Tue, 5 Oct 2021 12:47:32 +0300 Message-Id: <3ec19604ad2a8df447cc0c26ce4dbd257accb08a.1633411929.git.efraim@flashner.co.il> X-Mailer: git-send-email 2.33.0 In-Reply-To: References: MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/julia-xyz.scm (julia-dataframes): New variable. --- gnu/packages/julia-xyz.scm | 53 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 53 insertions(+) diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm index 5925ca2417..33f09a34d3 100644 --- a/gnu/packages/julia-xyz.scm +++ b/gnu/packages/julia-xyz.scm @@ -806,6 +806,59 @@ (define-public julia-dataapi dependency on it.") (license license:expat))) +(define-public julia-dataframes + (package + (name "julia-dataframes") + (version "1.2.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaData/DataFrames.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1bk0amrghgjrkyn1mm4ac23swwbgszl1d0qyl9137qj5zvv9dasp")))) + (build-system julia-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'skip-failing-test + (lambda _ + ;; Tests with non-standard colors. + (substitute* "test/show.jl" + (("test (sprint\\(show, df, context=:color=>true)" _ test) + (string-append "test_nowarn " test))) + (substitute* "test/io.jl" + (("testset \\\"improved.*" all) + (string-append all "return\n"))) + (substitute* "test/join.jl" + (("test (levels\\(outerjoin\\(B)" _ test) + (string-append "test_nowarn " test))) + #t))))) + (propagated-inputs + `(("julia-dataapi" ,julia-dataapi) + ("julia-invertedindices" ,julia-invertedindices) + ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions) + ("julia-missings" ,julia-missings) + ("julia-pooledarrays" ,julia-pooledarrays) + ("julia-prettytables" ,julia-prettytables) + ("julia-reexport" ,julia-reexport) + ("julia-sortingalgorithms" ,julia-sortingalgorithms) + ("julia-tables" ,julia-tables) + ("julia-tabletraits" ,julia-tabletraits))) + (native-inputs + `(("julia-categoricalarrays" ,julia-categoricalarrays) + ("julia-combinatorics" ,julia-combinatorics) + ("julia-datastructures" ,julia-datastructures) + ("julia-datavalues" ,julia-datavalues) + ("julia-offsetarrays" ,julia-offsetarrays) + ("julia-unitful" ,julia-unitful))) + (home-page "https://dataframes.juliadata.org/stable/") + (synopsis "In-memory tabular data") + (description "Tools for working with tabular data in Julia.") + (license license:expat))) + (define-public julia-datastructures (package (name "julia-datastructures") From patchwork Tue Oct 5 09:47:33 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Efraim Flashner X-Patchwork-Id: 33615 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id BDE6527BBE4; Tue, 5 Oct 2021 10:53:30 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.9 required=5.0 tests=BAYES_00,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 7CF8427BBE1 for ; Tue, 5 Oct 2021 10:53:30 +0100 (BST) Received: from localhost ([::1]:34162 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1mXh8b-0004He-Jk for patchwork@mira.cbaines.net; Tue, 05 Oct 2021 05:53:29 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:43198) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mXh7C-0002z4-PG for guix-patches@gnu.org; Tue, 05 Oct 2021 05:52:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:55816) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1mXh7C-00055g-Gw for guix-patches@gnu.org; Tue, 05 Oct 2021 05:52:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1mXh7C-0008Iz-G9 for guix-patches@gnu.org; Tue, 05 Oct 2021 05:52:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#51028] [PATCH 4/7] gnu: Add julia-bson. Resent-From: Efraim Flashner Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 05 Oct 2021 09:52:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 51028 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 51028@debbugs.gnu.org Cc: Efraim Flashner Received: via spool by 51028-submit@debbugs.gnu.org id=B51028.163342746431849 (code B ref 51028); Tue, 05 Oct 2021 09:52:02 +0000 Received: (at 51028) by debbugs.gnu.org; 5 Oct 2021 09:51:04 +0000 Received: from localhost ([127.0.0.1]:39126 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mXh6G-0008Hc-1M for submit@debbugs.gnu.org; Tue, 05 Oct 2021 05:51:04 -0400 Received: from flashner.co.il ([178.62.234.194]:36522) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mXh6E-0008Gz-J2 for 51028@debbugs.gnu.org; Tue, 05 Oct 2021 05:51:02 -0400 Received: from localhost (unknown [141.226.169.107]) by flashner.co.il (Postfix) with ESMTPSA id B9E0940417; Tue, 5 Oct 2021 09:50:56 +0000 (UTC) From: Efraim Flashner Date: Tue, 5 Oct 2021 12:47:33 +0300 Message-Id: X-Mailer: git-send-email 2.33.0 In-Reply-To: References: MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/julia-xyz.scm (julia-bson): New variable. --- gnu/packages/julia-xyz.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm index 33f09a34d3..f53d4bce6d 100644 --- a/gnu/packages/julia-xyz.scm +++ b/gnu/packages/julia-xyz.scm @@ -368,6 +368,29 @@ (define-public julia-blockbandedmatrices @code{BlockArrays.jl} whose layout of non-zero blocks is banded.") (license license:expat))) +(define-public julia-bson + (package + (name "julia-bson") + (version "0.3.3") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaIO/BSON.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1l5608ma2ys7v2gpcqbiv9mwfc6yrlqkihrfx1pf7fgv5llhd4fn")))) + (build-system julia-build-system) + (native-inputs + `(("julia-dataframes" ,julia-dataframes))) + (home-page "https://github.com/JuliaIO/BSON.jl") + (synopsis "Binary JSON serialisation format") + (description "@code{BSON.jl} is a Julia package for working with the Binary +JSON serialisation format. It can be used as a general store for Julia data +structures.") + (license license:expat))) + (define-public julia-bufferedstreams (package (name "julia-bufferedstreams") From patchwork Tue Oct 5 09:47:34 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Efraim Flashner X-Patchwork-Id: 33614 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id C72B327BBE3; Tue, 5 Oct 2021 10:52:11 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.9 required=5.0 tests=BAYES_00,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 9284727BBE1 for ; Tue, 5 Oct 2021 10:52:11 +0100 (BST) Received: from localhost ([::1]:60596 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1mXh7K-00034Y-Lq for patchwork@mira.cbaines.net; Tue, 05 Oct 2021 05:52:10 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:43200) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mXh7D-00030M-5S for guix-patches@gnu.org; Tue, 05 Oct 2021 05:52:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:55817) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1mXh7C-000566-TW for guix-patches@gnu.org; Tue, 05 Oct 2021 05:52:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1mXh7C-0008J6-Sh for guix-patches@gnu.org; Tue, 05 Oct 2021 05:52:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#51028] [PATCH 5/7] gnu: Add julia-expronicon. Resent-From: Efraim Flashner Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 05 Oct 2021 09:52:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 51028 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 51028@debbugs.gnu.org Cc: Efraim Flashner Received: via spool by 51028-submit@debbugs.gnu.org id=B51028.163342750331899 (code B ref 51028); Tue, 05 Oct 2021 09:52:02 +0000 Received: (at 51028) by debbugs.gnu.org; 5 Oct 2021 09:51:43 +0000 Received: from localhost ([127.0.0.1]:39129 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mXh6t-0008IR-AO for submit@debbugs.gnu.org; Tue, 05 Oct 2021 05:51:43 -0400 Received: from flashner.co.il ([178.62.234.194]:36526) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mXh6l-0008I8-LO for 51028@debbugs.gnu.org; Tue, 05 Oct 2021 05:51:42 -0400 Received: from localhost (unknown [141.226.169.107]) by flashner.co.il (Postfix) with ESMTPSA id D108040417; Tue, 5 Oct 2021 09:51:29 +0000 (UTC) From: Efraim Flashner Date: Tue, 5 Oct 2021 12:47:34 +0300 Message-Id: <1b3b8c579c5e30e0a07f3e57f992f3df9a95418d.1633411929.git.efraim@flashner.co.il> X-Mailer: git-send-email 2.33.0 In-Reply-To: References: MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/julia-xyz.scm (julia-expronicon): New variable. --- gnu/packages/julia-xyz.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm index f53d4bce6d..895e43bb14 100644 --- a/gnu/packages/julia-xyz.scm +++ b/gnu/packages/julia-xyz.scm @@ -1343,6 +1343,40 @@ (define-public julia-example (description "This package provides various examples.") (license license:expat)))) +;; ExproniconLite.jl is autogenerated from this package. +(define-public julia-expronicon + (package + (name "julia-expronicon") + (version "0.6.10") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/Roger-luo/Expronicon.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0h8aaynqlxrkn8575k5vqmhzil4vvxchhf0bcxa6zwawp558gj2y")))) + (build-system julia-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'skip-network-tests + (lambda _ + (substitute* "test/runtests.jl" + ;; This test tries to access the Julia package registry. + ((".*expand\\.jl.*") ""))))))) + (propagated-inputs + `(("julia-mlstyle" ,julia-mlstyle))) + (native-inputs + `(("julia-documenter" ,julia-documenter))) + (home-page "https://expronicon.rogerluo.dev/dev/") + (synopsis "Collective tools for metaprogramming on Julia Expr") + (description "This package provides a collection of tools for +metaprogramming on Julia Expr, the meta programming standard library for +@code{MLStyle}.") + (license license:expat))) + (define-public julia-exprtools (package (name "julia-exprtools") From patchwork Tue Oct 5 09:47:35 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Efraim Flashner X-Patchwork-Id: 33617 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 6108127BBE3; Tue, 5 Oct 2021 10:54:33 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.9 required=5.0 tests=BAYES_00,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 1FB7527BBE1 for ; Tue, 5 Oct 2021 10:54:33 +0100 (BST) Received: from localhost ([::1]:36640 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1mXh9c-0005xh-6W for patchwork@mira.cbaines.net; Tue, 05 Oct 2021 05:54:32 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:43444) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mXh8A-0004EP-Hg for guix-patches@gnu.org; Tue, 05 Oct 2021 05:53:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:55824) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1mXh8A-0005uq-9a for guix-patches@gnu.org; Tue, 05 Oct 2021 05:53:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1mXh8A-0008Kz-8b for guix-patches@gnu.org; Tue, 05 Oct 2021 05:53:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#51028] [PATCH 6/7] gnu: Add julia-configurations. Resent-From: Efraim Flashner Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 05 Oct 2021 09:53:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 51028 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 51028@debbugs.gnu.org Cc: Efraim Flashner Received: via spool by 51028-submit@debbugs.gnu.org id=B51028.163342753031973 (code B ref 51028); Tue, 05 Oct 2021 09:53:02 +0000 Received: (at 51028) by debbugs.gnu.org; 5 Oct 2021 09:52:10 +0000 Received: from localhost ([127.0.0.1]:39134 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mXh7J-0008Jd-Nl for submit@debbugs.gnu.org; Tue, 05 Oct 2021 05:52:09 -0400 Received: from flashner.co.il ([178.62.234.194]:36536) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mXh7I-0008JE-BK for 51028@debbugs.gnu.org; Tue, 05 Oct 2021 05:52:08 -0400 Received: from localhost (unknown [141.226.169.107]) by flashner.co.il (Postfix) with ESMTPSA id 8502540417; Tue, 5 Oct 2021 09:52:02 +0000 (UTC) From: Efraim Flashner Date: Tue, 5 Oct 2021 12:47:35 +0300 Message-Id: <95ebe917da1dac82eaa43123eb4d0c6817d4acb6.1633411929.git.efraim@flashner.co.il> X-Mailer: git-send-email 2.33.0 In-Reply-To: References: MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/julia-xyz.scm (julia-configurations): New variable. --- gnu/packages/julia-xyz.scm | 43 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 43 insertions(+) diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm index 895e43bb14..ee0e1fb74a 100644 --- a/gnu/packages/julia-xyz.scm +++ b/gnu/packages/julia-xyz.scm @@ -729,6 +729,49 @@ (define-public julia-compat way.") (license license:expat))) +(define-public julia-configurations + (package + (name "julia-configurations") + (version "0.16.4") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/Roger-luo/Configurations.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1b23p0zk8dx2sf01cnw177mqci7qd81b9s32ixz9clsh0r0icl1b")))) + (build-system julia-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-tests + (lambda _ + (substitute* "test/runtests.jl" + (("option.toml") "test/option.toml")) + #t)) + (add-after 'unpack 'dont-use-exproniconlite + (lambda _ + (substitute* '("Project.toml" + "src/Configurations.jl" + "test/runtests.jl") + (("ExproniconLite") "Expronicon")) + (substitute* "Project.toml" + (("55351af7-c7e9-48d6-89ff-24e801d99491") + "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636")) + #t))))) + (propagated-inputs + `(("julia-crayons" ,julia-crayons) + ("julia-expronicon" ,julia-expronicon) + ("julia-orderedcollections" ,julia-orderedcollections))) + (home-page "https://configurations.rogerluo.dev/stable/") + (synopsis "Options and configurations in Julia") + (description "@code{Configurations.jl} provides a macro @code{@@option} to +let you define @code{structs} to represent options/configurations, and serialize +between different option/configuration file formats such as @code{TOML}.") + (license license:expat))) + (define-public julia-constructionbase (package (name "julia-constructionbase") From patchwork Tue Oct 5 09:47:36 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Efraim Flashner X-Patchwork-Id: 33616 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 13CDC27BBE1; Tue, 5 Oct 2021 10:53:31 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.9 required=5.0 tests=BAYES_00,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 9AEE227BBE3 for ; Tue, 5 Oct 2021 10:53:30 +0100 (BST) Received: from localhost ([::1]:34182 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1mXh8b-0004Ig-NE for patchwork@mira.cbaines.net; Tue, 05 Oct 2021 05:53:29 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:43448) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mXh8A-0004FW-Ue for guix-patches@gnu.org; Tue, 05 Oct 2021 05:53:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:55825) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1mXh8A-0005vX-MV for guix-patches@gnu.org; Tue, 05 Oct 2021 05:53:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1mXh8A-0008L6-La for guix-patches@gnu.org; Tue, 05 Oct 2021 05:53:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#51028] [PATCH 7/7] gnu: Add julia-structarrays. Resent-From: Efraim Flashner Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 05 Oct 2021 09:53:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 51028 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 51028@debbugs.gnu.org Cc: Efraim Flashner Received: via spool by 51028-submit@debbugs.gnu.org id=B51028.163342756332020 (code B ref 51028); Tue, 05 Oct 2021 09:53:02 +0000 Received: (at 51028) by debbugs.gnu.org; 5 Oct 2021 09:52:43 +0000 Received: from localhost ([127.0.0.1]:39137 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mXh7r-0008KN-1B for submit@debbugs.gnu.org; Tue, 05 Oct 2021 05:52:43 -0400 Received: from flashner.co.il ([178.62.234.194]:36540) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mXh7p-0008KA-6G for 51028@debbugs.gnu.org; Tue, 05 Oct 2021 05:52:41 -0400 Received: from localhost (unknown [141.226.169.107]) by flashner.co.il (Postfix) with ESMTPSA id 40F3640417; Tue, 5 Oct 2021 09:52:35 +0000 (UTC) From: Efraim Flashner Date: Tue, 5 Oct 2021 12:47:36 +0300 Message-Id: <634081e9917c27267786be8cd71315895d69c933.1633411929.git.efraim@flashner.co.il> X-Mailer: git-send-email 2.33.0 In-Reply-To: References: MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/julia-xyz.scm (julia-structarrays): New variable. --- gnu/packages/julia-xyz.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm index ee0e1fb74a..8be2277728 100644 --- a/gnu/packages/julia-xyz.scm +++ b/gnu/packages/julia-xyz.scm @@ -4271,6 +4271,40 @@ (define-public julia-stringdistances applied to any distance.") (license license:expat))) +(define-public julia-structarrays + (package + (name "julia-structarrays") + (version "0.6.3") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaArrays/StructArrays.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0rjcpyjwzg70n87q5r9c5i1qzigavncslxssm3rk5a3y549py56v")))) + (build-system julia-build-system) + (propagated-inputs + `(("julia-dataapi" ,julia-dataapi) + ("julia-staticarrays" ,julia-staticarrays) + ("julia-tables" ,julia-tables))) + (native-inputs + `(("julia-documenter" ,julia-documenter) + ("julia-offsetarrays" ,julia-offsetarrays) + ("julia-pooledarrays" ,julia-pooledarrays) + ("julia-typedtables" ,julia-typedtables) + ("julia-weakrefstrings" ,julia-weakrefstrings))) + (home-page "https://github.com/JuliaArrays/StructArrays.jl") + (synopsis "Efficient implementation of struct arrays in Julia") + (description "This package introduces the type @code{StructArray} which is +an @code{AbstractArray} whose elements are @code{struct} (for example +@code{NamedTuples}, or @code{ComplexF64}, or a custom user defined +@code{struct}). While a @code{StructArray} iterates @code{structs}, the layout +is column based (meaning each field of the @code{struct} is stored in a separate +@code{Array}).") + (license license:expat))) + (define-public julia-structtypes (package (name "julia-structtypes")