From patchwork Sat Oct 2 03:41:15 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 33538 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 1277727BBE1; Sat, 2 Oct 2021 04:43:39 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,T_DKIM_INVALID, URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id A321827BBE3 for ; Sat, 2 Oct 2021 04:43:38 +0100 (BST) Received: from localhost ([::1]:45546 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1mWVw1-0003Zg-Qi for patchwork@mira.cbaines.net; Fri, 01 Oct 2021 23:43:37 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:50754) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mWVvS-0003VX-T1 for guix-patches@gnu.org; Fri, 01 Oct 2021 23:43:06 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:46135) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1mWVvS-00021B-LF for guix-patches@gnu.org; Fri, 01 Oct 2021 23:43:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1mWVvS-0003Lo-Gr for guix-patches@gnu.org; Fri, 01 Oct 2021 23:43:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#50956] [PATCH 1/3] gnu: Add python-cma. References: <20211002033916.64690-1-monego@posteo.net> In-Reply-To: <20211002033916.64690-1-monego@posteo.net> Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 02 Oct 2021 03:43:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 50956 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 50956@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 50956-submit@debbugs.gnu.org id=B50956.163314616212824 (code B ref 50956); Sat, 02 Oct 2021 03:43:02 +0000 Received: (at 50956) by debbugs.gnu.org; 2 Oct 2021 03:42:42 +0000 Received: from localhost ([127.0.0.1]:57675 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mWVv8-0003Km-4T for submit@debbugs.gnu.org; Fri, 01 Oct 2021 23:42:42 -0400 Received: from mout01.posteo.de ([185.67.36.65]:45773) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mWVv5-0003KT-Po for 50956@debbugs.gnu.org; Fri, 01 Oct 2021 23:42:40 -0400 Received: from submission (posteo.de [89.146.220.130]) by mout01.posteo.de (Postfix) with ESMTPS id 3336A240026 for <50956@debbugs.gnu.org>; Sat, 2 Oct 2021 05:42:34 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1633146154; bh=y29X890m8/++sqAC3IwRGKk1CiYMnc2QNpHBmgU7Kes=; h=From:To:Cc:Subject:Date:From; b=cIpNG03B53XvHXzPSpaXKJm81aQx3KwEUYiuJJn1ICFvGV7ECeQ2b172SHYd3O8CK OX/i7pHlGU1YbpavcJq3zQCOXNAlYr2A9YTRQaf+3Z/bbksY7Cujdoxym2MvtAiNIo MoSh7JWwF0hHQ8ljefjLippJCUmyPRHaQdA/hYh79EoTNLn45ludyvS5rL2qAe23eG s/xU2sgqrGdMA4RKkzH4Ti2kvoD6OpdM4v0RxZ0XqQGPoOeVfy1PjyhOfuT49JxO+P /lm8UqOtUAwhQlniNQMM5K4m99Z1mriqVN21t/aox6FCt2/j+medfvECZIyVaR1QGv EUZCiSTtxluZQ== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4HLt8n0rYgz9rxK; Sat, 2 Oct 2021 05:42:32 +0200 (CEST) From: Vinicius Monego Date: Sat, 2 Oct 2021 03:41:15 +0000 Message-Id: <20211002034117.64876-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/machine-learning.scm (python-cma): New variable. --- gnu/packages/machine-learning.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index e34de5df43..281c88d6f8 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -1150,6 +1150,33 @@ good at identifying feature interactions that are normally overlooked by standard feature selection algorithms.") (license license:expat))) +(define-public python-cma + (package + (name "python-cma") + (version "3.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "cma" version)) + (sha256 + (base32 "1ip32lnilbhmv1fyvmmdn5rcf084c0ps4q9dr3cf2ax5wdzhg0rv")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "python" "-m" "cma.test"))))))) + (propagated-inputs + `(("python-numpy" ,python-numpy))) + (home-page "https://github.com/CMA-ES/pycma") + (synopsis "Python implementation of CMA-ES") + (description "@code{pycma} is a Python implementation of CMA-ES and a few +related numerical optimization tools.") + (license license:bsd-3))) + (define-public python-cmaes (package (name "python-cmaes") From patchwork Sat Oct 2 03:41:16 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 33539 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id F35D027BBE3; Sat, 2 Oct 2021 04:44:44 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,T_DKIM_INVALID, URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id B8DFA27BBE1 for ; Sat, 2 Oct 2021 04:44:44 +0100 (BST) Received: from localhost ([::1]:47470 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1mWVx5-0004tM-Rw for patchwork@mira.cbaines.net; Fri, 01 Oct 2021 23:44:43 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:50756) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mWVvT-0003VY-6E for guix-patches@gnu.org; Fri, 01 Oct 2021 23:43:06 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:46136) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1mWVvS-00021I-Uo for guix-patches@gnu.org; Fri, 01 Oct 2021 23:43:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1mWVvS-0003Lw-TA for guix-patches@gnu.org; Fri, 01 Oct 2021 23:43:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#50956] [PATCH 2/3] gnu: Add python-skorch. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 02 Oct 2021 03:43:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 50956 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 50956@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 50956-submit@debbugs.gnu.org id=B50956.163314616512842 (code B ref 50956); Sat, 02 Oct 2021 03:43:02 +0000 Received: (at 50956) by debbugs.gnu.org; 2 Oct 2021 03:42:45 +0000 Received: from localhost ([127.0.0.1]:57678 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mWVvB-0003L4-C2 for submit@debbugs.gnu.org; Fri, 01 Oct 2021 23:42:45 -0400 Received: from mout01.posteo.de ([185.67.36.65]:44103) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mWVv9-0003Ka-RF for 50956@debbugs.gnu.org; Fri, 01 Oct 2021 23:42:44 -0400 Received: from submission (posteo.de [89.146.220.130]) by mout01.posteo.de (Postfix) with ESMTPS id 3D36E240026 for <50956@debbugs.gnu.org>; Sat, 2 Oct 2021 05:42:38 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1633146158; bh=T4z3KWZ1061fhGPEg9zQR9I+rRwOFuC9So8K6/irQWM=; h=From:To:Cc:Subject:Date:From; b=bO2qZD2eKy+gbAhiYgQh8ATK1VKh9E+ThVvKjHxqf63LAML1bIW8gnSPltzVHwWoM oToxA7tBx4LteID/NOUKszE8t5vo2cXw9VB9B3a3klMHz1P3gdzeI/NoET2hgIdY1d TccFsmYxu3YaPTNVsBOnBUyYNj5xkABHlf+lE9Z1BtmN45qMDhKxgtapbsi0rq5mNG KDFhCnjtn8FUua/BSZQGJelLU1bweoQN5snKLDX7UjAqPY8jn8SMQPJ75843bGb0bO xOuX5j88L5ikrs+ziYcWOn0eVGTA7WnsklrjAI9x+weQlzk85OP8YKFVhigsloKXVJ UqwMhXGppxkLg== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4HLt8s22lNz9rxK; Sat, 2 Oct 2021 05:42:37 +0200 (CEST) From: Vinicius Monego Date: Sat, 2 Oct 2021 03:41:16 +0000 Message-Id: <20211002034117.64876-2-monego@posteo.net> In-Reply-To: <20211002034117.64876-1-monego@posteo.net> References: <20211002034117.64876-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/machine-learning.scm (python-skorch): New variable. --- gnu/packages/machine-learning.scm | 42 +++++++++++++++++++++++++++++++ 1 file changed, 42 insertions(+) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 281c88d6f8..fd3e6b2090 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -1050,6 +1050,48 @@ number of threads used in the threadpool-backed of common native libraries used for scientific computing and data science (e.g. BLAS and OpenMP).") (license license:bsd-3))) +(define-public python-skorch + (package + (name "python-skorch") + (version "0.10.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "skorch" version)) + (sha256 + (base32 "196hr0q5nw1nzckwanfv27myasayfdxxhx80iv9whm7675rzj44r")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "python" "-m" "pytest" "--pyargs" "skorch" "-k" + (string-append + ;; Errors because of missing weight and pickle files. + "not test_load_cuda_params_to_cpu" + " and not test_pickle_load")))))))) + (propagated-inputs + `(("python-numpy" ,python-numpy) + ("python-scikit-learn" ,python-scikit-learn) + ("python-scipy" ,python-scipy) + ("python-tabulate" ,python-tabulate) + ("python-tqdm" ,python-tqdm))) + (native-inputs + `(("python-flaky" ,python-flaky) + ("python-pandas" ,python-pandas) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytorch" ,python-pytorch))) + (home-page "https://github.com/skorch-dev/skorch") + (synopsis "Scikit-learn compatible neural network library for PyTorch") + (description "Skorch is a scikit-learn compatible neural network library +that wraps PyTorch. It allows to build and train PyTorch models using a +scikit-learn-like API.") + (license license:bsd-3))) + (define-public python-pynndescent (package (name "python-pynndescent") From patchwork Sat Oct 2 03:41:17 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 33537 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id A457727BBE4; Sat, 2 Oct 2021 04:43:38 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,T_DKIM_INVALID, URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 18F8527BBE1 for ; Sat, 2 Oct 2021 04:43:38 +0100 (BST) Received: from localhost ([::1]:45496 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1mWVw0-0003XN-U6 for patchwork@mira.cbaines.net; Fri, 01 Oct 2021 23:43:37 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:50758) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mWVvT-0003Va-Jr for guix-patches@gnu.org; Fri, 01 Oct 2021 23:43:06 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:46137) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1mWVvT-00022C-BR for guix-patches@gnu.org; Fri, 01 Oct 2021 23:43:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1mWVvT-0003M3-9a for guix-patches@gnu.org; Fri, 01 Oct 2021 23:43:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#50956] [PATCH 3/3] gnu: Add python-optuna. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 02 Oct 2021 03:43:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 50956 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 50956@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 50956-submit@debbugs.gnu.org id=B50956.163314618012872 (code B ref 50956); Sat, 02 Oct 2021 03:43:03 +0000 Received: (at 50956) by debbugs.gnu.org; 2 Oct 2021 03:43:00 +0000 Received: from localhost ([127.0.0.1]:57681 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mWVvH-0003LN-Ku for submit@debbugs.gnu.org; Fri, 01 Oct 2021 23:43:00 -0400 Received: from mout01.posteo.de ([185.67.36.65]:53825) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mWVvF-0003Kv-AT for 50956@debbugs.gnu.org; Fri, 01 Oct 2021 23:42:51 -0400 Received: from submission (posteo.de [89.146.220.130]) by mout01.posteo.de (Postfix) with ESMTPS id B4631240026 for <50956@debbugs.gnu.org>; Sat, 2 Oct 2021 05:42:43 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1633146163; bh=6pSVPkSUrkJQ3Qr33QOug4S78cMFd4671bn1/o6Lq/M=; h=From:To:Cc:Subject:Date:From; b=OkVwMb2Z6K7YoxZ4RGHeXS12SLVo61pBVRELQcDBLEcZya/oL2WAbx+IQQ3MQG+LB yXTQOvTY7oj7WkgTEwuYveda0zeWwFO7JBBycXIYuVLxwe8aCjJSz+ouC8YfLIgcgF lNcWrUobzjDg9nR5utTwMPzqtvjfuAlLnnddBcFHJS5Vy8rQ7mWVi+5WueNMazEj2M pjOOsgQhHE46V+73aRbmHQTNPU7wjpy5xcjt0Ous8wLoJElrhe9dLrQ5W9WeQqSETY x92KSfVUdKxw9E/onwnRhKKmvHIudpwyqiyFoiJqKcO81cbttSgtjDT3ScbAAVYWYZ w+bGNAK13JPsg== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4HLt8y5HCMz6tm5; Sat, 2 Oct 2021 05:42:42 +0200 (CEST) From: Vinicius Monego Date: Sat, 2 Oct 2021 03:41:17 +0000 Message-Id: <20211002034117.64876-3-monego@posteo.net> In-Reply-To: <20211002034117.64876-1-monego@posteo.net> References: <20211002034117.64876-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/machine-learning.scm (python-optuna): New variable. --- gnu/packages/machine-learning.scm | 96 +++++++++++++++++++++++++++++++ 1 file changed, 96 insertions(+) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index fd3e6b2090..3b6f709c4e 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -74,6 +74,7 @@ #:use-module (gnu packages ocaml) #:use-module (gnu packages onc-rpc) #:use-module (gnu packages parallel) + #:use-module (gnu packages openstack) #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) #:use-module (gnu packages protobuf) @@ -938,6 +939,101 @@ computing environments.") (home-page "http://dlib.net") (license license:boost1.0))) +(define-public python-optuna + (package + (name "python-optuna") + (version "2.9.1") + (source + (origin + ;; No tests in the PyPI tarball. + (method git-fetch) + (uri (git-reference + (url "https://github.com/optuna/optuna") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1fx80qjrkmnvn2mg9fx26qn3sjlwnwqlmkaf6sqhdw79pn6khlpi")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'dont-check-deps + ;; Don't check for dependencies we don't have or don't need. + ;; TODO: Package and enable some of these. + (lambda _ + (substitute* "setup.py" + ((".*allennlp.*") "") + ((".*bokeh.*") "") + ((".*catalyst.*") "") + ((".*chainer.*") "") + ((".*fastai.*") "") + ((".*keras.*") "") + ((".*lightgbm.*") "") + ((".*mlflow.*") "") + ((".*mxnet.*") "") + ((".*plotly.*") "") + ((".*scikit-optimize.*") "") + ((".*skorch.*") "") + ((".*tensorflow.*") "") + ((".*torch.*") "") + ((".*xgboost.*") "")))) + (add-after 'unpack 'disable-some-tests + (lambda _ + ;; Integration tests require most of the dependencies above. + (delete-file-recursively "tests/integration_tests") + ;; TODO: Requires scikit-optimize. + (delete-file "tests/samplers_tests/test_samplers.py") + ;; TODO: Requires bokeh. + (delete-file "tests/test_dashboard.py") + ;; FIXME: "Optuna" executable is not found. + (delete-file "tests/test_cli.py") + ;; FIXME: Files below require plotly but setup fails to identify + ;; plotly version and suggests an upgrade to >= 4.0.0. + (delete-file "tests/visualization_tests/test_contour.py") + (delete-file (string-append "tests/multi_objective_tests/" + "visualization_tests/" + "test_pareto_front.py")) + (delete-file-recursively "tests/visualization_tests"))) + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "python" "-m" "pytest" "-k" + ;; redis.exceptions.ResponseError: unknown command 'TIME'. + (string-append + "not test_retry_failed_trial_callback" + " and not test_failed_trial_callback" + " and not test_fail_stale_trials_with_optimize")))))))) + (propagated-inputs + `(("python-alembic" ,python-alembic) + ("python-cliff" ,python-cliff) + ("python-cmaes" ,python-cmaes) + ("python-colorlog" ,python-colorlog) + ("python-numpy" ,python-numpy) + ("python-packaging" ,python-packaging) + ("python-pyyaml" ,python-pyyaml) + ("python-scipy" ,python-scipy) + ("python-sqlalchemy" ,python-sqlalchemy) + ("python-tqdm" ,python-tqdm))) + (native-inputs + `(("python-cma" ,python-cma) + ("python-fakeredis" ,python-fakeredis) + ("python-matplotlib" ,python-matplotlib) + ("python-mpi4py" ,python-mpi4py) + ("python-pandas" ,python-pandas) + ("python-pytest" ,python-pytest) + ("python-redis" ,python-redis) + ("python-scikit-learn" ,python-scikit-learn) + ("which" ,which))) + (home-page "https://optuna.org/") + (synopsis "Hyperparameter optimization framework") + (description "Optuna is an automatic hyperparameter optimization software +framework, particularly designed for machine learning. It features an +imperative, @emph{define-by-run} style user API. Thanks to it, the code +written with Optuna enjoys high modularity, and the user of Optuna can +dynamically construct the search spaces for the hyperparameters.") + (license license:expat))) + (define-public python-scikit-learn (package (name "python-scikit-learn")