From patchwork Fri Oct 1 09:26:06 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: jgart X-Patchwork-Id: 33483 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 57BFF27BBE3; Fri, 1 Oct 2021 10:28:02 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,T_DKIM_INVALID, URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 0377827BBE1 for ; Fri, 1 Oct 2021 10:28:02 +0100 (BST) Received: from localhost ([::1]:36080 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1mWEpl-00028N-4E for patchwork@mira.cbaines.net; Fri, 01 Oct 2021 05:28:01 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:34670) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mWEos-0000zI-8w for guix-patches@gnu.org; Fri, 01 Oct 2021 05:27:06 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:43135) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1mWEon-0001Fa-RQ for guix-patches@gnu.org; Fri, 01 Oct 2021 05:27:05 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1mWEon-0007ld-Lk for guix-patches@gnu.org; Fri, 01 Oct 2021 05:27:01 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#50932] [PATCH 1/2] gnu: Add r-fasterize. References: <20211001052420.GB15410@gac.attlocal.net> In-Reply-To: <20211001052420.GB15410@gac.attlocal.net> Resent-From: jgart Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 01 Oct 2021 09:27:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 50932 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 50932@debbugs.gnu.org Cc: jgart Received: via spool by 50932-submit@debbugs.gnu.org id=B50932.163308038729799 (code B ref 50932); Fri, 01 Oct 2021 09:27:01 +0000 Received: (at 50932) by debbugs.gnu.org; 1 Oct 2021 09:26:27 +0000 Received: from localhost ([127.0.0.1]:54677 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mWEoE-0007kZ-Rb for submit@debbugs.gnu.org; Fri, 01 Oct 2021 05:26:27 -0400 Received: from mx1.dismail.de ([78.46.223.134]:5143) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mWEoD-0007kM-Qh for 50932@debbugs.gnu.org; Fri, 01 Oct 2021 05:26:26 -0400 Received: from mx1.dismail.de (localhost [127.0.0.1]) by mx1.dismail.de (OpenSMTPD) with ESMTP id 26b2e0c2 for <50932@debbugs.gnu.org>; Fri, 1 Oct 2021 11:26:19 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed; d=dismail.de; h=from:to:cc :subject:date:message-id:mime-version:content-transfer-encoding; s=20190914; bh=JAxL/lkhsa22bysaMv17R4g/W369HoX34mwD9Ztprs0=; b= q87G7WSm6RTfAJ4pzi2N7CjI9wCCQb1BwLH8/gcb11bDThkqzz/djQXjD4AgzcD/ OqYHKu76c9YzaI7qR7wK//YNEgWnKJrr5CF993En6lRj2feURYd0S+d8HSdJGIe9 65LPFXuNKgJJQ18t8b57uZfSadqa/U5RvS3d4TjTly1L/K8O/eAVRMFw9y6lF72u 3eFBVT71I90crs5teGcGi8XJTOjjrOzmNJ37iRxPwoGJ5MqEr1bFY9O9KvfbqSi4 R38scxS58eOd5DfFpqn/xYG2yLt284hni7ye7hQ0nmBuswTT+LHIFLWCGHxgHLkd /RFYhM3r7keSJ9IZpak1OA== Received: from smtp1.dismail.de ( [10.240.26.11]) by mx1.dismail.de (OpenSMTPD) with ESMTP id a989cbe8 for <50932@debbugs.gnu.org>; Fri, 1 Oct 2021 11:26:19 +0200 (CEST) Received: from smtp1.dismail.de (localhost [127.0.0.1]) by smtp1.dismail.de (OpenSMTPD) with ESMTP id 1cdd8fb7 for <50932@debbugs.gnu.org>; Fri, 1 Oct 2021 11:26:19 +0200 (CEST) Received: by dismail.de (OpenSMTPD) with ESMTPSA id 7777664c (TLSv1.3:AEAD-AES256-GCM-SHA384:256:NO); Fri, 1 Oct 2021 11:26:14 +0200 (CEST) Date: Fri, 1 Oct 2021 05:26:06 -0400 Message-Id: <20211001092607.15776-1-jgart@dismail.de> X-Mailer: git-send-email 2.33.0 MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" Reply-to: jgart X-ACL-Warn: , jgart via Guix-patches X-Patchwork-Original-From: jgart via Guix-patches via From: jgart X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-fasterize): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ebfe9fd506..5f23f026ad 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -32038,6 +32038,34 @@ Python module, this utility provides a flexible and extensible way of formatting and delivering log messages with low overhead.") (license license:agpl3+))) +(define-public r-fasterize + (package + (name "r-fasterize") + (version "1.0.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "fasterize" version)) + (sha256 + (base32 "10bzl77c1b9jhcn1xp467qzp2n8c7s3wpxn53qjh1nwvbri5kd32")))) + (properties `((upstream-name . "fasterize"))) + (build-system r-build-system) + (propagated-inputs + `(("r-raster" ,r-raster) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-sp" ,r-sp))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/ecohealthalliance/fasterize") + (synopsis "Fast Polygon to Raster Conversion") + (description +"This package provides a drop-in replacement for @code{rasterize} from +the @code{raster} package that takes sf-type objects, and is much faster. +There is support for the main options provided by the @code{rasterize} +function, including setting the field used and background value, and +options for aggregating multi-layer rasters.") + (license license:expat))) + (define-public r-ggh4x (package (name "r-ggh4x") From patchwork Fri Oct 1 09:26:07 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: jgart X-Patchwork-Id: 33482 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 8160E27BBE3; Fri, 1 Oct 2021 10:27:16 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,T_DKIM_INVALID, URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 47DBC27BBE1 for ; Fri, 1 Oct 2021 10:27:16 +0100 (BST) Received: from localhost ([::1]:34414 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1mWEp1-00010s-BQ for patchwork@mira.cbaines.net; Fri, 01 Oct 2021 05:27:15 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:34668) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mWEos-0000zE-88 for guix-patches@gnu.org; Fri, 01 Oct 2021 05:27:06 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:43136) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1mWEoo-0001Ft-7R for guix-patches@gnu.org; Fri, 01 Oct 2021 05:27:05 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1mWEoo-0007lk-4I for guix-patches@gnu.org; Fri, 01 Oct 2021 05:27:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#50932] [PATCH 2/2] gnu: Add r-bien. Resent-From: jgart Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 01 Oct 2021 09:27:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 50932 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 50932@debbugs.gnu.org Cc: jgart Received: via spool by 50932-submit@debbugs.gnu.org id=B50932.163308039029816 (code B ref 50932); Fri, 01 Oct 2021 09:27:02 +0000 Received: (at 50932) by debbugs.gnu.org; 1 Oct 2021 09:26:30 +0000 Received: from localhost ([127.0.0.1]:54681 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mWEoI-0007kp-2o for submit@debbugs.gnu.org; Fri, 01 Oct 2021 05:26:30 -0400 Received: from mx1.dismail.de ([78.46.223.134]:5143) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mWEoE-0007kM-NN for 50932@debbugs.gnu.org; Fri, 01 Oct 2021 05:26:29 -0400 Received: from mx1.dismail.de (localhost [127.0.0.1]) by mx1.dismail.de (OpenSMTPD) with ESMTP id d31dbb79 for <50932@debbugs.gnu.org>; Fri, 1 Oct 2021 11:26:20 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed; d=dismail.de; h=from:to:cc :subject:date:message-id:in-reply-to:references:mime-version :content-transfer-encoding; s=20190914; bh=8a8Msp3RsLg5NAryrwI8v IxA0NdoIc7jcpwHgTYbwb0=; b=Wb/xvpL5exnjxAOBTMX5nv1Kub1BhRpKvO5Iy YQhJm77NsxN/gtxh66bgeNUGSecOBXU4UZNUZ8AprjBzPKGo/+rPwtjaoE4G5i6e DicMsvRJMWQGrlC2KVo+OYc4FvhHfFwJdnVuEyYeTAEW2Cfz6pw/64o5GwEWOBAb x6tijWLz/ojqT2siJCjXBVMrIG7Xn7BrsX4JfC2LJ4NfAGjnrjiU9FBL7kEGgeqk sF3i9rYtOi2juX4DhceqQEQmZ9FSwsd8+wmJYxSwheqiVeSQmL2ZQb0Q5a0Ymkuy H6fghX0yvuNi25VJGfgdjd5DhdKHfg7vtkyuAdVclZuMNauKA== Received: from smtp1.dismail.de ( [10.240.26.11]) by mx1.dismail.de (OpenSMTPD) with ESMTP id c390c038 for <50932@debbugs.gnu.org>; Fri, 1 Oct 2021 11:26:20 +0200 (CEST) Received: from smtp1.dismail.de (localhost [127.0.0.1]) by smtp1.dismail.de (OpenSMTPD) with ESMTP id 72d49633 for <50932@debbugs.gnu.org>; Fri, 1 Oct 2021 11:26:20 +0200 (CEST) Received: by dismail.de (OpenSMTPD) with ESMTPSA id a61263cf (TLSv1.3:AEAD-AES256-GCM-SHA384:256:NO); Fri, 1 Oct 2021 11:26:15 +0200 (CEST) Date: Fri, 1 Oct 2021 05:26:07 -0400 Message-Id: <20211001092607.15776-2-jgart@dismail.de> X-Mailer: git-send-email 2.33.0 In-Reply-To: <20211001092607.15776-1-jgart@dismail.de> References: <20211001092607.15776-1-jgart@dismail.de> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" Reply-to: jgart X-ACL-Warn: , jgart via Guix-patches X-Patchwork-Original-From: jgart via Guix-patches via From: jgart X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-bien): New variable. --- gnu/packages/cran.scm | 37 +++++++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5f23f026ad..3dee6feb49 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -32066,6 +32066,43 @@ function, including setting the field used and background value, and options for aggregating multi-layer rasters.") (license license:expat))) +(define-public r-bien + (package + (name "r-bien") + (version "1.2.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "BIEN" version)) + (sha256 + (base32 "1dagrs54ciagm2mgqrvxl6k2akahr0qk63ifxqnks7iljm0x1gw6")))) + (properties `((upstream-name . "BIEN"))) + (build-system r-build-system) + (native-inputs + `(("r-knitr" ,r-knitr) + ("r-testthat" ,r-testthat))) + (propagated-inputs + `(("r-ape" ,r-ape) + ("r-dbi" ,r-dbi) + ("r-doparallel" ,r-doparallel) + ("r-fasterize" ,r-fasterize) + ("r-foreach" ,r-foreach) + ("r-raster" ,r-raster) + ("r-rgdal" ,r-rgdal) + ("r-rgeos" ,r-rgeos) + ("r-rpostgresql" ,r-rpostgresql) + ("r-sf" ,r-sf) + ("r-sp" ,r-sp))) + (home-page "https://cran.r-project.org/package=BIEN") + (synopsis "Tools for Accessing the BIEN Database") + (description +"This package provides Tools for Accessing the Botanical Information +and Ecology Network Database. The BIEN database contains cleaned and +standardized botanical data including occurrence, trait, plot and taxonomic +data. This package provides functions that query the BIEN database by +constructing and executing optimized SQL queries.") + (license license:expat))) + (define-public r-ggh4x (package (name "r-ggh4x")