From patchwork Sun May 23 19:31:31 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 29519 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 623B427BC81; Sun, 23 May 2021 20:33:27 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H4,RCVD_IN_MSPIKE_WL,SPF_HELO_PASS, T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 14C8527BC78 for ; Sun, 23 May 2021 20:33:27 +0100 (BST) Received: from localhost ([::1]:54978 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lktqo-0004u7-9D for patchwork@mira.cbaines.net; Sun, 23 May 2021 15:33:26 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:40262) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lktqP-0004th-Sm for guix-patches@gnu.org; Sun, 23 May 2021 15:33:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:58470) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lktqP-0008MT-Mg for guix-patches@gnu.org; Sun, 23 May 2021 15:33:01 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lktqP-0003GE-KB for guix-patches@gnu.org; Sun, 23 May 2021 15:33:01 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#48614] [PATCH 1/3] gnu: Add python-pyshp. References: <20210523192931.425681-1-monego@posteo.net> In-Reply-To: <20210523192931.425681-1-monego@posteo.net> Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 23 May 2021 19:33:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 48614 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 48614@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 48614-submit@debbugs.gnu.org id=B48614.162179832512453 (code B ref 48614); Sun, 23 May 2021 19:33:01 +0000 Received: (at 48614) by debbugs.gnu.org; 23 May 2021 19:32:05 +0000 Received: from localhost ([127.0.0.1]:41778 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lktpV-0003Ei-C7 for submit@debbugs.gnu.org; Sun, 23 May 2021 15:32:05 -0400 Received: from mout01.posteo.de ([185.67.36.65]:48265) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lktpS-0003E0-Pg for 48614@debbugs.gnu.org; Sun, 23 May 2021 15:32:03 -0400 Received: from submission (posteo.de [89.146.220.130]) by mout01.posteo.de (Postfix) with ESMTPS id 65928240029 for <48614@debbugs.gnu.org>; Sun, 23 May 2021 21:31:56 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1621798316; bh=z+BpxMIF/YvBIHSUpezUHst4VRPl04GdQJ2N/mG8cjA=; h=From:To:Cc:Subject:Date:From; b=qRkUrc/9IHJBliEIrJm8vHjNcJ2unjL7N9TSmTQZ7NxIDu/UvAvkpzKKuA2pyVf34 w2asyN1JyMyJtMQG1vK983mn8FDTsXowltVZHbi2lLcvxi6dBvYW45p1fluKeibhO7 auvtL/Tet+QYrjAV1dO01panjo+EPE5o2AA1Fz4d7Be6ySm2vlSubzJ2YbeokWec+v QVngqlRT/Obk4o4Y5KhnWIcL6SZjlVDqOaiBNXh/V8tL5wSQyJSfWXiyNXFhjWWSvK Rrqfk/i47rj8o5F+zEbzKU1OJdVfHplXsK48YU8aO5RFC93IAj6O2fuL9nF4zc//Tn SYk02QkVPIAxQ== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4Fp9T65Dqdz6tmJ; Sun, 23 May 2021 21:31:54 +0200 (CEST) From: Vinicius Monego Date: Sun, 23 May 2021 19:31:31 +0000 Message-Id: <20210523193134.425937-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/python-xyz.scm (python-pyshp): New variable. --- gnu/packages/python-xyz.scm | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index f79fc54e24..18410dac39 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -5806,6 +5806,37 @@ operators such as union, intersection, and difference.") (define-public python2-pysnptools (package-with-python2 python-pysnptools)) +(define-public python-pyshp + (package + (name "python-pyshp") + (version "2.1.3") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/GeospatialPython/pyshp") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0jsraqzq82pw19wvx84x7w5cs8agr44a9b5y0jjw540wim4xa73r")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + ;; This is the only test file. + (invoke "python" "-m" "pytest" "test_shapefile.py"))))))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://github.com/GeospatialPython/pyshp") + (synopsis "Read/write support for ESRI Shapefile format") + (description + "The Python Shapefile Library (PyShp) reads and writes ESRI Shapefiles.") + (license license:expat))) + (define-public python-wurlitzer (package (name "python-wurlitzer") From patchwork Sun May 23 19:31:32 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 29521 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id DDDED27BC81; Sun, 23 May 2021 20:33:37 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H4,RCVD_IN_MSPIKE_WL,SPF_HELO_PASS, T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id A8EF727BC78 for ; Sun, 23 May 2021 20:33:37 +0100 (BST) Received: from localhost ([::1]:55428 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lktqy-0005Cp-Sc for patchwork@mira.cbaines.net; Sun, 23 May 2021 15:33:36 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:40264) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lktqQ-0004tn-IL for guix-patches@gnu.org; Sun, 23 May 2021 15:33:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:58471) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lktqQ-0008N0-3Y for guix-patches@gnu.org; Sun, 23 May 2021 15:33:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lktqQ-0003GL-1G for guix-patches@gnu.org; Sun, 23 May 2021 15:33:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#48614] [PATCH 2/3] gnu: Add python-pykdtree. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 23 May 2021 19:33:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 48614 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 48614@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 48614-submit@debbugs.gnu.org id=B48614.162179833012471 (code B ref 48614); Sun, 23 May 2021 19:33:01 +0000 Received: (at 48614) by debbugs.gnu.org; 23 May 2021 19:32:10 +0000 Received: from localhost ([127.0.0.1]:41781 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lktpZ-0003F4-P0 for submit@debbugs.gnu.org; Sun, 23 May 2021 15:32:10 -0400 Received: from mout02.posteo.de ([185.67.36.66]:60663) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lktpU-0003E4-9J for 48614@debbugs.gnu.org; Sun, 23 May 2021 15:32:05 -0400 Received: from submission (posteo.de [89.146.220.130]) by mout02.posteo.de (Postfix) with ESMTPS id 4D7192400FE for <48614@debbugs.gnu.org>; Sun, 23 May 2021 21:31:58 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1621798318; bh=xtg/yVJ8B3NZ6vDHeQbUBgc36DqqLZZY6VmtXUh91VE=; h=From:To:Cc:Subject:Date:From; b=plPpV70+XXB3D9aITH7/MfKVpqUZRxlkVdcdHQlh7PXDcB+AFFVsP0OmuVqVRY1co yhai7zqlcE8GWShhKTN/d2tQz5LcGtUiXLgkXODY/rmXjGBOjnJrPqCKcPKY+L/yLt +eQBaTTNSrVq/AguCWDjk+GucwJ1oEBO7g5HxItKldIYKM9xrLngoNEG/jQnvmuxVu jE+e4eX83MMozXaFUSzCYbGpI05j29dKodbMNVQM5q6mY8CTHnOEltfpyRHQDXCGMx QTk1O8r3fcyK8CBtb7qvgo5fr2+7qtveSCxn4OYKcPQiUwuE0eg5GPAaORKqbLS26A C6HsE8XfZIRvA== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4Fp9T84BF8z6tmJ; Sun, 23 May 2021 21:31:56 +0200 (CEST) From: Vinicius Monego Date: Sun, 23 May 2021 19:31:32 +0000 Message-Id: <20210523193134.425937-2-monego@posteo.net> In-Reply-To: <20210523193134.425937-1-monego@posteo.net> References: <20210523193134.425937-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/python-xyz.scm (python-pykdtree): New variable. --- gnu/packages/python-xyz.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 18410dac39..4c8774cd60 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -5837,6 +5837,28 @@ operators such as union, intersection, and difference.") "The Python Shapefile Library (PyShp) reads and writes ESRI Shapefiles.") (license license:expat))) +(define-public python-pykdtree + (package + (name "python-pykdtree") + (version "1.3.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pykdtree" version)) + (sha256 + (base32 "0p8n2ljdacfixkiw092974dmhy4s1c0h032ii1z9kwi9h5h5rgmy")))) + (build-system python-build-system) + (native-inputs + `(("python-nose" ,python-nose))) + (propagated-inputs + `(("python-numpy" ,python-numpy))) + (home-page "https://github.com/storpipfugl/pykdtree") + (synopsis "Fast kd-tree implementation with OpenMP-enabled queries") + (description + "@code{pykdtree} is a kd-tree implementation for fast nearest neighbour +search in Python.") + (license license:lgpl3+))) + (define-public python-wurlitzer (package (name "python-wurlitzer") From patchwork Sun May 23 19:31:33 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 29520 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 8CA5B27BC81; Sun, 23 May 2021 20:33:32 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.1 required=5.0 tests=BAYES_00,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H4,RCVD_IN_MSPIKE_WL,SPF_HELO_PASS, T_DKIM_INVALID,URIBL_BLOCKED,URIBL_SBL,URIBL_SBL_A autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 5151727BC78 for ; Sun, 23 May 2021 20:33:32 +0100 (BST) Received: from localhost ([::1]:55200 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lktqt-00053q-GJ for patchwork@mira.cbaines.net; Sun, 23 May 2021 15:33:31 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:40266) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lktqQ-0004tr-Mq for guix-patches@gnu.org; Sun, 23 May 2021 15:33:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:58472) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lktqQ-0008N5-HN for guix-patches@gnu.org; Sun, 23 May 2021 15:33:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lktqQ-0003GT-En for guix-patches@gnu.org; Sun, 23 May 2021 15:33:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#48614] [PATCH 3/3] gnu: Add python-cartopy. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 23 May 2021 19:33:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 48614 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 48614@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 48614-submit@debbugs.gnu.org id=B48614.162179833012477 (code B ref 48614); Sun, 23 May 2021 19:33:02 +0000 Received: (at 48614) by debbugs.gnu.org; 23 May 2021 19:32:10 +0000 Received: from localhost ([127.0.0.1]:41783 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lktpa-0003F6-3D for submit@debbugs.gnu.org; Sun, 23 May 2021 15:32:10 -0400 Received: from mout01.posteo.de ([185.67.36.65]:41327) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lktpW-0003E7-0s for 48614@debbugs.gnu.org; Sun, 23 May 2021 15:32:06 -0400 Received: from submission (posteo.de [89.146.220.130]) by mout01.posteo.de (Postfix) with ESMTPS id 75CF4240027 for <48614@debbugs.gnu.org>; Sun, 23 May 2021 21:32:00 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1621798320; bh=bJlkgyezgGYqrlyaOqcw2fp1FfD6RIORxRDx7UHRRVc=; h=From:To:Cc:Subject:Date:From; b=ZeGyJJ4ENdjQL0uLEsr07LPDK2maFfF7duKyklSlI+KDzfnwTslxJ53r2+6dxbHnS SEevbucumma/HC5ntpvp8wYQNym8d//zXemvOOUm8Spvimt6WnstanQrjr90kb1sBF Wy+VzK9kKcJWlofJwniAwK4vkJuy0/uD6QHeqWCKQbq6vE1TtgeafLOpiqVjDraEco JS0l9q9IhRXXaIxflcjRD6yo2Wld0S1WqfM/zSGPPsEZhGmIPpykbTHp2gSCXerPvY X7jiU83KaNiO/7ox7wL1E+2S9KvDi8INqEyWXw2H61VfTnlxJJn0znxpN5Kv1dkVFH zOEhsJenRkxNw== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4Fp9TB3Xxvz6tmB; Sun, 23 May 2021 21:31:58 +0200 (CEST) From: Vinicius Monego Date: Sun, 23 May 2021 19:31:33 +0000 Message-Id: <20210523193134.425937-3-monego@posteo.net> In-Reply-To: <20210523193134.425937-1-monego@posteo.net> References: <20210523193134.425937-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/python-science.scm (python-cartopy): New variable. --- gnu/packages/python-science.scm | 56 +++++++++++++++++++++++++++++++++ 1 file changed, 56 insertions(+) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 79ee7c8bb2..9d4edaa4df 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -33,6 +33,7 @@ #:use-module (gnu packages base) #:use-module (gnu packages check) #:use-module (gnu packages gcc) + #:use-module (gnu packages geo) #:use-module (gnu packages maths) #:use-module (gnu packages perl) #:use-module (gnu packages python) @@ -208,6 +209,61 @@ depends on @code{scipy.weave}. For new code, users are recommended to use Cython.") (license license:bsd-3))) +(define-public python-cartopy + (package + (name "python-cartopy") + (version "0.19.0.post1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Cartopy" version)) + (sha256 + (base32 "0xnm8z3as3hriivdfd26s6vn5b63gb46x6vxw6gh1mwfm5rlg2sb")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "python" "-m" "pytest" "--pyargs" "cartopy" + ;; These tests require online data. + "-m" "not natural_earth and not network" + ;; This one too but it's not marked as such. + "-k" "not test_gridliner_labels_bbox_style"))))))) + (propagated-inputs + `(("python-matplotlib" ,python-matplotlib) + ("python-numpy" ,python-numpy) + ("python-pykdtree" ,python-pykdtree) + ("python-pyshp" ,python-pyshp) + ("python-scipy" ,python-scipy) + ("python-shapely" ,python-shapely))) + (inputs + `(("geos" ,geos) + ("proj" ,proj))) + (native-inputs + `(("python-cython" ,python-cython) + ("python-flufl-lock" ,python-flufl-lock) + ("python-pytest" ,python-pytest))) + (home-page "https://scitools.org.uk/cartopy/docs/latest/") + (synopsis "Cartographic library for visualisation") + (description + "Cartopy is a Python package designed to make drawing maps for data +analysis and visualisation easy. + +It features: + +@itemize +@item object oriented projection definitions +@item point, line, polygon and image transformations between projections +@item integration to expose advanced mapping in Matplotlib with a simple and +intuitive interface +@item powerful vector data handling by integrating shapefile reading with +Shapely capabilities +@end itemize") + (license license:lgpl3+))) + (define-public python-scikit-fuzzy (package (name "python-scikit-fuzzy")