From patchwork Tue Mar 9 14:12:09 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 27558 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id D5E1D27BC51; Tue, 9 Mar 2021 14:16:37 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H3,RCVD_IN_MSPIKE_WL,SPF_HELO_PASS, T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 9199F27BC50 for ; Tue, 9 Mar 2021 14:16:37 +0000 (GMT) Received: from localhost ([::1]:41892 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lJdA4-0000Q8-Ls for patchwork@mira.cbaines.net; Tue, 09 Mar 2021 09:16:36 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:36912) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lJd8Y-0007oi-7l for guix-patches@gnu.org; Tue, 09 Mar 2021 09:15:03 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:34500) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lJd8X-0000X9-Ty for guix-patches@gnu.org; Tue, 09 Mar 2021 09:15:01 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lJd8X-0005fw-P4 for guix-patches@gnu.org; Tue, 09 Mar 2021 09:15:01 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#47022] [PATCH 1/3] gnu: Add python-pooch. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 09 Mar 2021 14:15:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 47022 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 47022@debbugs.gnu.org Cc: Vinicius Monego X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.161529929421784 (code B ref -1); Tue, 09 Mar 2021 14:15:01 +0000 Received: (at submit) by debbugs.gnu.org; 9 Mar 2021 14:14:54 +0000 Received: from localhost ([127.0.0.1]:46046 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lJd8N-0005fE-2Q for submit@debbugs.gnu.org; Tue, 09 Mar 2021 09:14:54 -0500 Received: from lists.gnu.org ([209.51.188.17]:40724) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lJd8I-0005f3-2g for submit@debbugs.gnu.org; Tue, 09 Mar 2021 09:14:49 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:36764) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lJd8H-0007Z5-Su for guix-patches@gnu.org; Tue, 09 Mar 2021 09:14:45 -0500 Received: from mout01.posteo.de ([185.67.36.65]:58535) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lJd8E-0000J8-Bp for guix-patches@gnu.org; Tue, 09 Mar 2021 09:14:45 -0500 Received: from submission (posteo.de [89.146.220.130]) by mout01.posteo.de (Postfix) with ESMTPS id 1EF0516005F for ; Tue, 9 Mar 2021 15:14:38 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1615299278; bh=nlnOy37NvKNtmS5yJbrqoS3oPrMDkvk7JGm2ixu1RsY=; h=From:To:Cc:Subject:Date:From; b=l4vRwZZ5y1ocQ4nzWT4ncNqcFrzFo4iqsuyQUmI4K5PreITX8zWa/I9kJEbboa3rW izbzDGm9AOv63SLk+tN10byw9G4qvVOi+UzaRAvN8PibyiAamd+ziYQ0gvqO1323u/ ZdqRuq2ock3i8difnuXQjbgMl2sfaocvxFCV0Wy+CfG7KJDYV6j+MP8tdNhM6Pkl0E iyOvRFOJ0g0uurr2K1I7VyT4MJQOQCtAe9+bcUHRB+WgSWP3iGFriLSERqyhGMSxNx mJadT2xCpe0MsdaTRpT9LYCVclXl7b/UFHIFmEnPLgGcTCH6PwQ0/0+4iib+jYodQ8 pNGz+C9Dde4jw== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4Dvxzc1fVZz6tm6; Tue, 9 Mar 2021 15:14:35 +0100 (CET) From: Vinicius Monego Date: Tue, 9 Mar 2021 11:12:09 -0300 Message-Id: <20210309141209.1651-1-monego@posteo.net> X-Mailer: git-send-email 2.30.1 MIME-Version: 1.0 Received-SPF: pass client-ip=185.67.36.65; envelope-from=monego@posteo.net; helo=mout01.posteo.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, RCVD_IN_MSPIKE_H4=0.001, RCVD_IN_MSPIKE_WL=0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/python-xyz.scm (python-pooch): New variable. --- gnu/packages/python-xyz.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 912b9db62b..c1b67bffc6 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -19248,6 +19248,31 @@ library: to minimize boilerplate code in traditional extension modules by inferring type information using compile-time introspection.") (license license:bsd-3))) +(define-public python-pooch + (package + (name "python-pooch") + (version "1.3.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pooch" version)) + (sha256 + (base32 "1618adsg9r8fsv422sv35z1i723q3a1iir5v7dv2sklh4pl4im1h")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ;requires online data + (propagated-inputs + `(("python-appdirs" ,python-appdirs) + ("python-packaging" ,python-packaging) + ("python-requests" ,python-requests))) + (home-page "https://github.com/fatiando/pooch") + (synopsis "Manage your Python library's sample data files") + (description + "Pooch manages your Python library's sample data files: it automatically +downloads and stores them in a local directory, with support for versioning +and corruption checks.") + (license license:bsd-3))) + (define-public python-fasteners (package (name "python-fasteners") From patchwork Tue Mar 9 14:15:54 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 27560 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id DF23E27BC51; Tue, 9 Mar 2021 14:24:49 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H3,RCVD_IN_MSPIKE_WL,SPF_HELO_PASS, T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 4E71027BC50 for ; Tue, 9 Mar 2021 14:24:49 +0000 (GMT) Received: from localhost ([::1]:34962 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lJdI0-0001Gr-I3 for patchwork@mira.cbaines.net; Tue, 09 Mar 2021 09:24:48 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:38670) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lJdCQ-0002zU-Di for guix-patches@gnu.org; Tue, 09 Mar 2021 09:19:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:34539) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lJdCQ-0002LC-3q for guix-patches@gnu.org; Tue, 09 Mar 2021 09:19:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lJdCP-0005oH-WF for guix-patches@gnu.org; Tue, 09 Mar 2021 09:19:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#47022] [PATCH 2/3] gnu: python-scikit-image: Update to 0.18.1. References: <20210309141209.1651-1-monego@posteo.net> In-Reply-To: <20210309141209.1651-1-monego@posteo.net> Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 09 Mar 2021 14:19:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 47022 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 47022@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 47022-submit@debbugs.gnu.org id=B47022.161529952522247 (code B ref 47022); Tue, 09 Mar 2021 14:19:01 +0000 Received: (at 47022) by debbugs.gnu.org; 9 Mar 2021 14:18:45 +0000 Received: from localhost ([127.0.0.1]:46066 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lJdC8-0005mk-U5 for submit@debbugs.gnu.org; Tue, 09 Mar 2021 09:18:45 -0500 Received: from mout01.posteo.de ([185.67.36.65]:55396) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lJdC7-0005mJ-8e for 47022@debbugs.gnu.org; Tue, 09 Mar 2021 09:18:43 -0500 Received: from submission (posteo.de [89.146.220.130]) by mout01.posteo.de (Postfix) with ESMTPS id 0776916005F for <47022@debbugs.gnu.org>; Tue, 9 Mar 2021 15:18:36 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1615299517; bh=Y5j4Aqd3SeXWdSNtMRrOQy1m+hx0tEypr46cJSC5YAc=; h=From:To:Cc:Subject:Date:From; b=rif0ODij3K5SLTVksVq5yqtAe+JtD438I3MP4LNtyB+3lBxwGCycGA2Yek+CeAJ5C p8sisQgY40uHwHlBXpswMMTuZEKNpBBWOxWPDggKcL4pUZ73nfdRxRN5UcxC0XR3Zc ddC6BBQrlI/HXigCqJM0+VnwviLznRlfwoKKS0PzZGo5rc3DLBW4kTH4/5t47orDFw vxKAJKoHzSTW8PZzX0/3EcsLGmwigftx2I3TBZeH2U0NUZ7fSoEYIAsG65UolRiQeY Kd8QZPF9PxHfqVpD1XlYG1C0mWdqdqTXqcwUsMMlQjXtW7xxgtIYQwDr4dAYE/VDO2 B7E76UXPr65SQ== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4Dvy4B5nNzz9rxr; Tue, 9 Mar 2021 15:18:34 +0100 (CET) From: Vinicius Monego Date: Tue, 9 Mar 2021 11:15:54 -0300 Message-Id: <20210309141555.1892-1-monego@posteo.net> X-Mailer: git-send-email 2.30.1 MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/python-science.scm (python-scikit-image): Update to 0.18.1. [propagated-inputs]: Remove python-six. --- gnu/packages/python-science.scm | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index a1e2b57669..250ab4a192 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -9,7 +9,7 @@ ;;; Copyright © 2019 Maxim Cournoyer ;;; Copyright © 2019 Giacomo Leidi ;;; Copyright © 2020 Pierre Langlois -;;; Copyright © 2020 Vinicius Monego +;;; Copyright © 2020, 2021 Vinicius Monego ;;; Copyright © 2021 Greg Hogan ;;; ;;; This file is part of GNU Guix. @@ -240,18 +240,18 @@ logic, also known as grey logic.") (define-public python-scikit-image (package (name "python-scikit-image") - (version "0.17.2") + (version "0.18.1") (source (origin (method url-fetch) (uri (pypi-uri "scikit-image" version)) (sha256 - (base32 "1cyqqbcbrg3prc36wis0sm3q5rjhd7h9bp33jwfyixzhi02lr5dx")))) + (base32 "0wgisa03smhrphcjnhq7waa5vyyd32b67hblapjbqrqqj751idpv")))) (build-system python-build-system) (arguments ;; TODO: Some tests require running X11 server. Disable them? '(#:tests? #f)) - ;; See DEPENDS.txt for the list of build and run time requiremnts + ;; See requirements/ for the list of build and run time requirements. (propagated-inputs `(("python-cloudpickle" ,python-cloudpickle) ("python-dask" ,python-dask) @@ -262,7 +262,6 @@ logic, also known as grey logic.") ("python-pillow" ,python-pillow) ("python-pywavelets" ,python-pywavelets) ("python-scipy" ,python-scipy) - ("python-six" ,python-six) ("python-tifffile" ,python-tifffile))) (native-inputs `(("python-cython" ,python-cython))) From patchwork Tue Mar 9 14:15:55 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 27559 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id E591527BC51; Tue, 9 Mar 2021 14:24:02 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H3,RCVD_IN_MSPIKE_WL,SPF_HELO_PASS, T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 4675427BC50 for ; Tue, 9 Mar 2021 14:24:02 +0000 (GMT) Received: from localhost ([::1]:60466 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lJdHF-0008VM-Dt for patchwork@mira.cbaines.net; Tue, 09 Mar 2021 09:24:01 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:38678) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lJdCQ-00030K-PP for guix-patches@gnu.org; Tue, 09 Mar 2021 09:19:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:34541) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lJdCQ-0002LP-Fv for guix-patches@gnu.org; Tue, 09 Mar 2021 09:19:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lJdCQ-0005oR-Ck for guix-patches@gnu.org; Tue, 09 Mar 2021 09:19:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#47022] [PATCH 3/3] gnu: scikit-image: Enable tests. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 09 Mar 2021 14:19:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 47022 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 47022@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 47022-submit@debbugs.gnu.org id=B47022.161529953922318 (code B ref 47022); Tue, 09 Mar 2021 14:19:02 +0000 Received: (at 47022) by debbugs.gnu.org; 9 Mar 2021 14:18:59 +0000 Received: from localhost ([127.0.0.1]:46082 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lJdCF-0005nd-BH for submit@debbugs.gnu.org; Tue, 09 Mar 2021 09:18:59 -0500 Received: from mout02.posteo.de ([185.67.36.66]:56019) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lJdCC-0005ma-7W for 47022@debbugs.gnu.org; Tue, 09 Mar 2021 09:18:49 -0500 Received: from submission (posteo.de [89.146.220.130]) by mout02.posteo.de (Postfix) with ESMTPS id 816A22400FE for <47022@debbugs.gnu.org>; Tue, 9 Mar 2021 15:18:41 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1615299521; bh=YJy8tmFkk2p7yODONa5Zq3oSY51xs/dQk0VzNvxFfxw=; h=From:To:Cc:Subject:Date:From; b=QgAKDsqNFpmXrNlbjHkXYX9F05nUyKlkOKkTxCieu+CqhJbrSOUTxVtsCRsng5iHo Tpxl76vR+Vt0WHTyZV78L/hrgeC13q4MP5KkhEfeB+FnRJ7/WbKorm8w0fIl2bSIQ5 R6W1U4+4UyWhlBOmgChcKIRNxsajN9j80VKjKtlhLGX3v1yV6N7qvqypDTkqudKqIT pzOuOReqP5PKJIXMvAOZ8PIZDJiuJdckBUlSQQUZ7sJYSEhtGev4Ua+mqiw4PKgE4L cofVeyuzLtG3gMKe1R20pvJhlANC/+Vw6xi7G0cXkIjppHfxJr3zzflPYRdIbSrN++ dpSJBGizrNLJA== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4Dvy4H3jQbz9rxQ; Tue, 9 Mar 2021 15:18:39 +0100 (CET) From: Vinicius Monego Date: Tue, 9 Mar 2021 11:15:55 -0300 Message-Id: <20210309141555.1892-2-monego@posteo.net> X-Mailer: git-send-email 2.30.1 In-Reply-To: <20210309141555.1892-1-monego@posteo.net> References: <20210309141555.1892-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/python-science.scm (scikit-image)[arguments]: Add phases related to tests. [native-inputs]: Add python-codecov, python-flake8, python-pytest, python-pytest-cov, python-pytest-localserver, python-wheel. --- gnu/packages/python-science.scm | 30 +++++++++++++++++++++++++++--- 1 file changed, 27 insertions(+), 3 deletions(-) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 250ab4a192..552c4c50cd 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -36,6 +36,8 @@ #:use-module (gnu packages maths) #:use-module (gnu packages perl) #:use-module (gnu packages python) + #:use-module (gnu packages python-build) + #:use-module (gnu packages python-check) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) #:use-module (gnu packages sphinx) @@ -249,9 +251,25 @@ logic, also known as grey logic.") (base32 "0wgisa03smhrphcjnhq7waa5vyyd32b67hblapjbqrqqj751idpv")))) (build-system python-build-system) (arguments - ;; TODO: Some tests require running X11 server. Disable them? - '(#:tests? #f)) + `(#:phases + (modify-phases %standard-phases + (add-before 'build 'change-home-dir + (lambda _ + ;; Change from /homeless-shelter to /tmp for write permission. + (setenv "HOME" "/tmp") + #t)) + (replace 'build + (lambda _ + (invoke "make"))) + (replace 'check + (lambda _ + ;; The following tests require online data. + (invoke "python" "-m" "pytest" "skimage" "--doctest-modules" "-k" + (string-append "not test_ndim" + " and not test_skin"))))))) ;; See requirements/ for the list of build and run time requirements. + ;; NOTE: scikit-image has an optional dependency on python-pooch, however + ;; propagating it would enable many more tests that require online data. (propagated-inputs `(("python-cloudpickle" ,python-cloudpickle) ("python-dask" ,python-dask) @@ -264,7 +282,13 @@ logic, also known as grey logic.") ("python-scipy" ,python-scipy) ("python-tifffile" ,python-tifffile))) (native-inputs - `(("python-cython" ,python-cython))) + `(("python-codecov" ,python-codecov) + ("python-cython" ,python-cython) + ("python-flake8" ,python-flake8) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-localserver" ,python-pytest-localserver) + ("python-wheel" ,python-wheel))) (home-page "https://scikit-image.org/") (synopsis "Image processing in Python") (description