From patchwork Wed Dec 30 13:38:39 2020 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?q?Wiktor_=C5=BBelazny?= X-Patchwork-Id: 26116 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 79C7E27BC06; Wed, 30 Dec 2020 13:40:11 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H4,RCVD_IN_MSPIKE_WL,SPF_HELO_PASS, T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id D794927BC05 for ; Wed, 30 Dec 2020 13:40:10 +0000 (GMT) Received: from localhost ([::1]:53432 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kubhy-0004ZK-0q for patchwork@mira.cbaines.net; Wed, 30 Dec 2020 08:40:10 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:43352) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kubhs-0004ZC-Cy for guix-patches@gnu.org; Wed, 30 Dec 2020 08:40:04 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:59688) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1kubhs-00009n-5Q for guix-patches@gnu.org; Wed, 30 Dec 2020 08:40:04 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1kubhr-0005nz-VQ for guix-patches@gnu.org; Wed, 30 Dec 2020 08:40:03 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#45553] [PATCH 1/3] gnu: Add r-mlr3learners. References: <20201230133555.7479-1-wz@freeshell.de> In-Reply-To: <20201230133555.7479-1-wz@freeshell.de> Resent-From: Wiktor =?utf-8?q?=C5=BBelazny?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 30 Dec 2020 13:40:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 45553 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 45553@debbugs.gnu.org Received: via spool by 45553-submit@debbugs.gnu.org id=B45553.160933554521697 (code B ref 45553); Wed, 30 Dec 2020 13:40:03 +0000 Received: (at 45553) by debbugs.gnu.org; 30 Dec 2020 13:39:05 +0000 Received: from localhost ([127.0.0.1]:42855 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kubgt-0005dO-MN for submit@debbugs.gnu.org; Wed, 30 Dec 2020 08:39:05 -0500 Received: from freeshell.de ([94.247.40.156]:42388 ident=postfix) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kubgo-0005bq-3F for 45553@debbugs.gnu.org; Wed, 30 Dec 2020 08:39:00 -0500 Received: from localhost.localdomain (cst-prg-26-156.cust.vodafone.cz [46.135.26.156]) (Authenticated sender: wz) by freeshell.de (Postfix) with ESMTPSA id E961735CE8F0 for <45553@debbugs.gnu.org>; Wed, 30 Dec 2020 14:38:56 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freeshell.de; s=mail; t=1609335537; bh=wET0eR0ijPhkxDgY+sj75P/mf2mGFcbWQWfY/0UD6mc=; h=From:To:Subject:Date:From; b=qU+jTrx9nC+gcLs+piASiwVhIRBjVpS6b0d/qKGcSVAdAD+L/Yo0sdyXY3AsF5s2b IgDRoQ3W+zkFqy/zhc4qB1YVKPRKjfmcajVqXm0DBDweY5KyUqv3mcYPT2VQeUz9HA EVEzEVHe/qgXBD9Tl5b1zzCO9kcHk98srvY+V57w= From: Wiktor =?utf-8?q?=C5=BBelazny?= Date: Wed, 30 Dec 2020 14:38:39 +0100 Message-Id: <20201230133841.7645-1-wz@freeshell.de> X-Mailer: git-send-email 2.29.2 MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-mlr3learners): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 0483af3d6b..362978c2a3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -25493,3 +25493,29 @@ scalability and larger datasets by supporting parallelization and out-of-memory data-backends like databases. While @code{mlr3} focuses on the core computational operations, add-on packages provide additional functionality.") (license license:lgpl3))) + +(define-public r-mlr3learners + (package + (name "r-mlr3learners") + (version "0.4.3") + (source (origin + (method url-fetch) + (uri (cran-uri "mlr3learners" version)) + (sha256 + (base32 + "1wxlpzz3hpkn77n4ag1v868dmp140j1pmrhynsv5xfgk9fg0w7ri")))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-mlr3" ,r-mlr3) + ("r-mlr3misc" ,r-mlr3misc) + ("r-paradox" ,r-paradox) + ("r-r6" ,r-r6))) + (home-page "https://mlr3learners.mlr-org.com/") + (synopsis "Recommended Learners for @code{mlr3}") + (description "@code{mlr3learners} extends @code{mlr3} and @code{mlr3proba} +with interfaces to essential machine learning packages on CRAN. This includes, +but is not limited to: (penalized) linear and logistic regression, linear and +quadratic discriminant analysis, k-nearest neighbors, naive Bayes, support +vector machines, and gradient boosting.") + (license license:lgpl3))) From patchwork Wed Dec 30 13:38:40 2020 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?q?Wiktor_=C5=BBelazny?= X-Patchwork-Id: 26118 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 28AE327BC06; Wed, 30 Dec 2020 13:40:54 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H4,RCVD_IN_MSPIKE_WL,SPF_HELO_PASS, T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id A83AD27BC05 for ; Wed, 30 Dec 2020 13:40:53 +0000 (GMT) Received: from localhost ([::1]:54272 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kubie-00052O-SM for patchwork@mira.cbaines.net; Wed, 30 Dec 2020 08:40:52 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:43358) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kubhu-0004Zx-10 for guix-patches@gnu.org; Wed, 30 Dec 2020 08:40:06 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:59693) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1kubht-0000C8-PW for guix-patches@gnu.org; Wed, 30 Dec 2020 08:40:05 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1kubht-0005oM-Lk for guix-patches@gnu.org; Wed, 30 Dec 2020 08:40:05 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#45553] [PATCH 2/3] gnu: Add r-bbotk. Resent-From: Wiktor =?utf-8?q?=C5=BBelazny?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 30 Dec 2020 13:40:05 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 45553 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 45553@debbugs.gnu.org Received: via spool by 45553-submit@debbugs.gnu.org id=B45553.160933554921728 (code B ref 45553); Wed, 30 Dec 2020 13:40:05 +0000 Received: (at 45553) by debbugs.gnu.org; 30 Dec 2020 13:39:09 +0000 Received: from localhost ([127.0.0.1]:42863 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kubgy-0005eM-QT for submit@debbugs.gnu.org; Wed, 30 Dec 2020 08:39:09 -0500 Received: from freeshell.de ([94.247.40.156]:42390 ident=postfix) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kubgo-0005c3-3I for 45553@debbugs.gnu.org; Wed, 30 Dec 2020 08:39:01 -0500 Received: from localhost.localdomain (cst-prg-26-156.cust.vodafone.cz [46.135.26.156]) (Authenticated sender: wz) by freeshell.de (Postfix) with ESMTPSA id 2EBF035CE8F2 for <45553@debbugs.gnu.org>; Wed, 30 Dec 2020 14:38:57 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freeshell.de; s=mail; t=1609335537; bh=P6rk2bePDYnx+rzVeTpaoQTvLQUM+EdU3zVwqxwIaqU=; h=From:To:Subject:Date:In-Reply-To:References:From; b=ht8MEKtUjcsAgtfA92M8aUV3lw2W/NJY+/4qDqhsTaMqJMbkSzzR+wGWESIKD7Gse J6n+/xcxChxH2QyqkXOX0DNkgIt0GKStt7arEWHF9+t3gQr5ILRyCQjDEbN10pmiVb 3GjFTfqMg03UvVWVoP/9w5r/CkAclkqThCCQZdB8= From: Wiktor =?utf-8?q?=C5=BBelazny?= Date: Wed, 30 Dec 2020 14:38:40 +0100 Message-Id: <20201230133841.7645-2-wz@freeshell.de> X-Mailer: git-send-email 2.29.2 In-Reply-To: <20201230133841.7645-1-wz@freeshell.de> References: <20201230133841.7645-1-wz@freeshell.de> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-bbotk): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 362978c2a3..a31e08fce5 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -25519,3 +25519,31 @@ but is not limited to: (penalized) linear and logistic regression, linear and quadratic discriminant analysis, k-nearest neighbors, naive Bayes, support vector machines, and gradient boosting.") (license license:lgpl3))) + +(define-public r-bbotk + (package + (name "r-bbotk") + (version "0.2.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "bbotk" version)) + (sha256 + (base32 + "06iz6gyymcxkbjiw049v1dk3vjfni646z247q08i2s0x59sqfqxv")))) + (properties `((upstream-name . "bbotk"))) + (build-system r-build-system) + (propagated-inputs + `(("r-checkmate" ,r-checkmate) + ("r-data-table" ,r-data-table) + ("r-lgr" ,r-lgr) + ("r-mlr3misc" ,r-mlr3misc) + ("r-paradox" ,r-paradox) + ("r-r6" ,r-r6))) + (home-page "https://bbotk.mlr-org.com") + (synopsis "Black-Box Optimization Toolkit") + (description "This package provides a common framework for optimization of +black-box functions for other packages, e.g. @code{mlr3}. It offers various +optimization methods e.g. grid search, random search and generalized simulated +annealing.") + (license license:lgpl3))) From patchwork Wed Dec 30 13:38:41 2020 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?q?Wiktor_=C5=BBelazny?= X-Patchwork-Id: 26117 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id F2B6E27BC06; Wed, 30 Dec 2020 13:40:39 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H4,RCVD_IN_MSPIKE_WL,SPF_HELO_PASS, T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 7E2A227BC05 for ; Wed, 30 Dec 2020 13:40:39 +0000 (GMT) Received: from localhost ([::1]:53566 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kubiQ-0004dc-KV for patchwork@mira.cbaines.net; Wed, 30 Dec 2020 08:40:38 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:43366) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kubhv-0004bg-Ep for guix-patches@gnu.org; Wed, 30 Dec 2020 08:40:07 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:59697) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1kubhv-0000CP-5N for guix-patches@gnu.org; Wed, 30 Dec 2020 08:40:07 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1kubhu-0005ok-WD for guix-patches@gnu.org; Wed, 30 Dec 2020 08:40:07 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#45553] [PATCH 3/3] gnu: Add r-mlr3tuning. Resent-From: Wiktor =?utf-8?q?=C5=BBelazny?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 30 Dec 2020 13:40:06 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 45553 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 45553@debbugs.gnu.org Received: via spool by 45553-submit@debbugs.gnu.org id=B45553.160933554921734 (code B ref 45553); Wed, 30 Dec 2020 13:40:06 +0000 Received: (at 45553) by debbugs.gnu.org; 30 Dec 2020 13:39:09 +0000 Received: from localhost ([127.0.0.1]:42865 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kubgz-0005eP-5G for submit@debbugs.gnu.org; Wed, 30 Dec 2020 08:39:09 -0500 Received: from freeshell.de ([94.247.40.156]:42392 ident=postfix) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kubgo-0005c8-72 for 45553@debbugs.gnu.org; Wed, 30 Dec 2020 08:39:02 -0500 Received: from localhost.localdomain (cst-prg-26-156.cust.vodafone.cz [46.135.26.156]) (Authenticated sender: wz) by freeshell.de (Postfix) with ESMTPSA id 694B335CE8F3 for <45553@debbugs.gnu.org>; Wed, 30 Dec 2020 14:38:57 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freeshell.de; s=mail; t=1609335537; bh=tC6g/o1APNAkgwnBRT46l4107WvDI/Py3ej1jHRbQeI=; h=From:To:Subject:Date:In-Reply-To:References:From; b=CcLLzPNreCpAzSdXrmg/M/oC5lilYC9zD+FVSLtAROX2m8oceYO0WJt4bwePD2Tbk 2WXoYAc9/5vpzKWud9jjHj6vB/g3LiB1nxfFb7gmR4a78rEGj1YlbON0mMHbp9d8Jy bHM4hZ9htlrKglklP6yZquxwFkoK7bFjznZZCFps= From: Wiktor =?utf-8?q?=C5=BBelazny?= Date: Wed, 30 Dec 2020 14:38:41 +0100 Message-Id: <20201230133841.7645-3-wz@freeshell.de> X-Mailer: git-send-email 2.29.2 In-Reply-To: <20201230133841.7645-1-wz@freeshell.de> References: <20201230133841.7645-1-wz@freeshell.de> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-mlr3tuning): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a31e08fce5..40f8e82c34 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -25547,3 +25547,31 @@ black-box functions for other packages, e.g. @code{mlr3}. It offers various optimization methods e.g. grid search, random search and generalized simulated annealing.") (license license:lgpl3))) + +(define-public r-mlr3tuning + (package + (name "r-mlr3tuning") + (version "0.5.0") + (source (origin + (method url-fetch) + (uri (cran-uri "mlr3tuning" version)) + (sha256 + (base32 + "1pn80qjxzj2pivgs6qgairci6yh1bdnl2zbgl9ykdip2rqzv6r6m")))) + (build-system r-build-system) + (propagated-inputs + `(("r-bbotk" ,r-bbotk) + ("r-checkmate" ,r-checkmate) + ("r-data-table" ,r-data-table) + ("r-lgr" ,r-lgr) + ("r-mlr3" ,r-mlr3) + ("r-mlr3misc" ,r-mlr3misc) + ("r-paradox" ,r-paradox) + ("r-r6" ,r-r6))) + (home-page "https://mlr3tuning.mlr-org.com/") + (synopsis "Tuning for @code{mlr3}") + (description "@code{mlr3tuning} implements methods for hyperparameter +tuning, e.g. Grid Search, Random Search, or Simulated Annealing. Various +termination criteria can be set and combined. The class @code{AutoTuner} provides a +convenient way to perform nested resampling in combination with @code{mlr3}.") + (license license:lgpl3)))