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envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-gagedata): New variable. --- gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 85ee56c539..36274d0b39 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9187,3 +9187,29 @@ CATALYST (Cytometry dATa anALYSis Tools) to provide a pipeline for preprocessing of cytometry data, including i) normalization using bead standards, ii) single-cell deconvolution, and iii) bead-based compensation.") (license license:gpl2+))) + +(define-public r-gagedata + (package + (name "r-gagedata") + (version "2.28.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "gageData" version 'experiment)) + (sha256 + (base32 "16lmnvmbykvbdgwyx7r2jc217gb9nidn81860v5kri99g97j4jdn")))) + (properties `((upstream-name . "gageData"))) + (build-system r-build-system) + (home-page "https://bioconductor.org/packages/gageData") + (synopsis "Auxillary data for gage package") + (description + "This is a supportive data package for the software package @code{gage}. +However, the data supplied here are also useful for gene set or pathway +analysis or microarray data analysis in general. In this package, we provide +two demo microarray dataset: GSE16873 (a breast cancer dataset from GEO) and +BMP6 (originally published as an demo dataset for GAGE, also registered as +GSE13604 in GEO). This package also includes commonly used gene set data based +on KEGG pathways and GO terms for major research species, including human, +mouse, rat and budding yeast. Mapping data between common gene IDs for budding +yeast are also included.") + (license license:gpl2+)))