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envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-org-eck12-eg-db): New variable. --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 3026d1a496..2d96cc7766 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9273,3 +9273,30 @@ graphs. It parses the regularly updated kgml (Kegg xml) files into graph models maintaining all essential pathway attributes. The package offers functionalities including parsing, graph operation, visualization and etc.") (license license:gpl2+))) + +(define-public r-org-eck12-eg-db + (package + (name "r-org-eck12-eg-db") + (version "3.12.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "org.EcK12.eg.db" version 'annotation)) + (sha256 + (base32 "0c4p6jr83k0gm6pvn760yr8xf33wggrfcr6fg7a42a96bcf817gs")))) + (properties + `((upstream-name . "org.EcK12.eg.db"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi))) + (home-page "https://bioconductor.org/packages/org.EcK12.eg.db") + (synopsis "Genome wide annotation for E coli strain K12") + (description + "This package provides genome wide annotation for E coli strain K12, +primarily based on mapping using Entrez Gene identifiers. Entrez Gene is +National Center for Biotechnology Information (NCBI)’s database for +gene-specific information. Entrez Gene maintains records from genomes which +have been completely sequenced, which have an active research community to +submit gene-specific information, or which are scheduled for intense sequence +analysis.") + (license license:artistic2.0)))