From patchwork Thu Oct 29 10:44:00 2020 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Roel Janssen X-Patchwork-Id: 24870 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 913F827BBF3; Thu, 29 Oct 2020 10:45:12 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.9 required=5.0 tests=BAYES_00,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H4,RCVD_IN_MSPIKE_WL,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 254B227BBF2 for ; Thu, 29 Oct 2020 10:45:12 +0000 (GMT) Received: from localhost ([::1]:38264 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kY5Qd-0007nx-AQ for patchwork@mira.cbaines.net; Thu, 29 Oct 2020 06:45:11 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:48096) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kY5QU-0007nb-Ie for guix-patches@gnu.org; Thu, 29 Oct 2020 06:45:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:40436) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1kY5QU-0006yo-7S for guix-patches@gnu.org; Thu, 29 Oct 2020 06:45:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1kY5QU-00046T-4v for guix-patches@gnu.org; Thu, 29 Oct 2020 06:45:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#44304] [PATCH] gnu: Update htslib to 1.11. Resent-From: Roel Janssen Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 29 Oct 2020 10:45:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 44304 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 44304@debbugs.gnu.org X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.160396825115693 (code B ref -1); Thu, 29 Oct 2020 10:45:01 +0000 Received: (at submit) by debbugs.gnu.org; 29 Oct 2020 10:44:11 +0000 Received: from localhost ([127.0.0.1]:51982 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kY5Pe-000453-LZ for submit@debbugs.gnu.org; Thu, 29 Oct 2020 06:44:10 -0400 Received: from lists.gnu.org ([209.51.188.17]:55262) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kY5Pc-00044v-Vt for submit@debbugs.gnu.org; Thu, 29 Oct 2020 06:44:10 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:48028) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kY5Pc-0007lZ-Of for guix-patches@gnu.org; Thu, 29 Oct 2020 06:44:08 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]:37687) by eggs.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kY5Pc-0006hc-Fm for guix-patches@gnu.org; Thu, 29 Oct 2020 06:44:08 -0400 Received: from 2001-1c02-0b2a-aa00-93bf-7c8c-0fae-b738.cable.dynamic.v6.ziggo.nl ([2001:1c02:b2a:aa00:93bf:7c8c:fae:b738]:49396) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1kY5Pc-0008Fm-1S for guix-patches@gnu.org; Thu, 29 Oct 2020 06:44:08 -0400 Message-ID: <6ccd23fc29b49611b82d9cc26461dfc294796aa3.camel@gnu.org> From: Roel Janssen Date: Thu, 29 Oct 2020 11:44:00 +0100 User-Agent: Evolution 3.38.1 (3.38.1-1.fc33) MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches Dear Guix, I'd like to update htslib to 1.11. The patch is straightfoward. Kind regards, Roel Janssen From 8ed33ee9ce51e7e64faf5f3aad0684eb965ed131 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Thu, 29 Oct 2020 11:41:27 +0100 Subject: [PATCH] gnu: Update htslib to 1.11. * gnu/packages/bioinformatics.scm (htslib): Update to 1.11. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 41d92401ad..09216f6a8d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4215,7 +4215,7 @@ performance.") (define-public htslib (package (name "htslib") - (version "1.9") + (version "1.11") (source (origin (method url-fetch) (uri (string-append @@ -4223,7 +4223,7 @@ performance.") version "/htslib-" version ".tar.bz2")) (sha256 (base32 - "16ljv43sc3fxmv63w7b2ff8m1s7h89xhazwmbm1bicz8axq8fjz0")))) + "1mrq4mihzx37yqhj3sfz6da6mw49niia808bzsw2gkkgmadxvyng")))) (build-system gnu-build-system) ;; Let htslib translate "gs://" and "s3://" to regular https links with ;; "--enable-gcs" and "--enable-s3". For these options to work, we also -- 2.26.2