From patchwork Wed Oct 14 17:24:05 2020 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: =?utf-8?q?Wiktor_=C5=BBelazny?= X-Patchwork-Id: 24619 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 3B52327BBEC; Wed, 14 Oct 2020 18:25:09 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H4,RCVD_IN_MSPIKE_WL,T_DKIM_INVALID, URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id A78CD27BBEB for ; Wed, 14 Oct 2020 18:25:08 +0100 (BST) Received: from localhost ([::1]:55396 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kSkWR-0006fU-LQ for patchwork@mira.cbaines.net; Wed, 14 Oct 2020 13:25:07 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:47234) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kSkWM-0006fK-Ja for guix-patches@gnu.org; Wed, 14 Oct 2020 13:25:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:41379) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1kSkWM-0003S3-9P for guix-patches@gnu.org; Wed, 14 Oct 2020 13:25:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1kSkWM-000153-7x for guix-patches@gnu.org; Wed, 14 Oct 2020 13:25:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#43991] [PATCH] gnu: r-sf: Use proj instead of proj.4. Resent-From: Wiktor =?utf-8?q?=C5=BBelazny?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 14 Oct 2020 17:25:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 43991 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 43991@debbugs.gnu.org X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.16026962784117 (code B ref -1); Wed, 14 Oct 2020 17:25:02 +0000 Received: (at submit) by debbugs.gnu.org; 14 Oct 2020 17:24:38 +0000 Received: from localhost ([127.0.0.1]:52925 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kSkVs-00014G-OH for submit@debbugs.gnu.org; Wed, 14 Oct 2020 13:24:38 -0400 Received: from lists.gnu.org ([209.51.188.17]:43790) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kSkVq-000148-Pa for submit@debbugs.gnu.org; Wed, 14 Oct 2020 13:24:31 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:47104) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kSkVq-0006SN-Cb for guix-patches@gnu.org; Wed, 14 Oct 2020 13:24:30 -0400 Received: from freeshell.de ([2a01:360:106::2]:55532) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kSkVm-0003Mu-CH for guix-patches@gnu.org; Wed, 14 Oct 2020 13:24:29 -0400 Received: from localhost.localdomain (cst-prg-3-166.cust.vodafone.cz [46.135.3.166]) (Authenticated sender: wz) by freeshell.de (Postfix) with ESMTPSA id 366F035CD7AF for ; Wed, 14 Oct 2020 19:24:18 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freeshell.de; s=mail; t=1602696258; bh=2Jip9Y8ygiohQdZ413vpc+/u08sVuAQLjPKwM2XS7UU=; h=From:To:Subject:Date:From; b=fKyQe6Sp+5gQrjL9cvbr+QAUmMUmRSJvkWVpp/7jPBIkENkQz3MCk94F+Mtx1jqMv fGBSkfm4JB3bNGWxwMX8HQhtCbqL+3HqKqNDhWN36seCVz+zzAyTEaETm2QvA7TT/W GKRxFe8AtzXr3aNz7TmLwwMMNL2144/q9uqTEwfQ= From: Wiktor =?utf-8?q?=C5=BBelazny?= Date: Wed, 14 Oct 2020 19:24:05 +0200 Message-Id: <20201014172405.1910-1-wz@freeshell.de> X-Mailer: git-send-email 2.28.0 MIME-Version: 1.0 Received-SPF: pass client-ip=2a01:360:106::2; envelope-from=wz@freeshell.de; helo=freeshell.de X-detected-operating-system: by eggs.gnu.org: No matching host in p0f cache. That's all we know. X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches From: Wiktor Żelazny * gnu/packages/cran.scm (r-sf)[inputs]: Replace proj.4 with proj, and add sqlite. This addresses segfaults while loading vector GIS data from a file. --- gnu/packages/cran.scm | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 59a409f8e9..252699c691 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -17,7 +17,7 @@ ;;; Copyright © 2018 Marius Bakke ;;; Copyright © 2018, 2019 Brett Gilio ;;; Copyright © 2019 Nicolò Balzarotti -;;; Copyright © 2019 Wiktor Żelazny +;;; Copyright © 2019, 2020 Wiktor Żelazny ;;; Copyright © 2019 Arne Babenhauserheide ;;; Copyright © 2019, 2020 Efraim Flashner ;;; Copyright © 2020 Todor Kondić @@ -90,6 +90,7 @@ #:use-module (gnu packages pulseaudio) ;libsndfile #:use-module (gnu packages python) #:use-module (gnu packages python-xyz) + #:use-module (gnu packages sqlite) #:use-module (gnu packages statistics) #:use-module (gnu packages tcl) #:use-module (gnu packages tls) @@ -13957,7 +13958,8 @@ tessellation.") (inputs `(("gdal" ,gdal) ("geos" ,geos) - ("proj" ,proj.4) + ("proj" ,proj) + ("sqlite" ,sqlite) ("zlib" ,zlib))) (propagated-inputs `(("r-classint" ,r-classint)